Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10084 ATGGACATGTACGGTTCCTTTTCTAACCCTTCAGATTGTTTACGCATTGATGATTTTTCAGATTTCTCCAACCATTCCTTCACCGCCACCGATTCTCACCACCTTCCTCCACCGCAGCACCCTTTCACCGATCAATTCTCCGATGACCCCAATTTCTTCATCAATTTCCCTTCCATCCCCAGCGACGAAGCAGCAGAGCTCGAATGGCTCTCCCAATTCGTCGACGACACGACATCGTTTGACGATTTCCCGGCGAGGCACATTATCCCCATGGAATCCCACACGACGTCGTTCCTCAAGAATAATATTAATAATGCTACAAATAATAATAATAACAGTAGTAGTAGTAAGAATAGTCATAGTAATAATCCCAAATCATCAGAGGTAATTCCTTCGTCGTCCTCGGTGGCCGGAAAATCGAGATCGAAGAGGGAGGGGAATGGAGGGTCACCGGCCGGAGAGGGAGGGGTTAGGAGGTGCAGCCACTGCGCATCAGAGAAAACACCGCAATGGAGAACGGGACCACTAGGTCCGAAGACGCTTTGCAATGCGTGCGGTGTGAGGTTCAAATCGGGTCGGCTCGTGCCCGAATACCGACCCGCAGCTAGTCCCACCTTCGTGCTGACTCAGCACTCCAACTCTCACCGGAAAGTCATGGAGCTCCGTCGCCAGAAGGAGCTGCTCCGCCAACAACAGCAGCAGCAACAACAGCAAGAGCAATGCTATCGTCACATGCATGATTTCAAAGTTTGCTGA 756 0.5053 MDMYGSFSNPSDCLRIDDFSDFSNHSFTATDSHHLPPPQHPFTDQFSDDPNFFINFPSIPSDEAAELEWLSQFVDDTTSFDDFPARHIIPMESHTTSFLKNNINNATNNNNNSSSSKNSHSNNPKSSEVIPSSSSVAGKSRSKREGNGGSPAGEGGVRRCSHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRLVPEYRPAASPTFVLTQHSNSHRKVMELRRQKELLRQQQQQQQQQEQCYRHMHDFKVC. 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10084 251 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 158 218 - -
Seca4g10084 251 ProSitePatterns GATA-type zinc finger domain. 160 185 IPR000679 GO:0006355|GO:0043565
Seca4g10084 251 FunFam GATA transcription factor 151 237 - -
Seca4g10084 251 SMART GATA_3 154 204 IPR000679 GO:0006355|GO:0043565
Seca4g10084 251 PANTHER GATA TRANSCRIPTION FACTOR 137 237 - -
Seca4g10084 251 Coils Coil 218 238 - -
Seca4g10084 251 Pfam GATA zinc finger 160 193 IPR000679 GO:0006355|GO:0043565
Seca4g10084 251 MobiDBLite consensus disorder prediction 101 141 - -
Seca4g10084 251 ProSiteProfiles GATA-type zinc finger domain profile. 158 190 IPR000679 GO:0006355|GO:0043565
Seca4g10084 251 CDD ZnF_GATA 159 206 IPR000679 GO:0006355|GO:0043565
Seca4g10084 251 Gene3D - 157 244 IPR013088 GO:0006355|GO:0008270
Seca4g10084 251 MobiDBLite consensus disorder prediction 101 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10084 Seca-Chr4 234214530 234215503 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10084 35 235 C2C2-Gata Transcription Factor Family AT2G45050 51.142 1.30e-60 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g10084 GATA 9.1e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10084 - - gmx:100782863 284.648