Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10069 ATGAATGCCATGGCTTCTCTGCTTCCTCCAACTGCAACTGCAACCACTACAATTCAACATAATCAAATGACAATCTGCTTCTCTCCCCTGAAACCCTTCACCCCAAATAATGTTTCTTTCTTAACAAACCGTTTCAAGAGCAACCCTGCAAAGTGTAATGCATTGTTTGATAGTGTGGCCAAGGGTTTGTTGGAGAACACTGTTAGTCTGGACCAGTTTCCTAGTCTTCAATCAGGATTAGTGCAATTTCAGAGAGTAACTGAAGACTTGTCAGACATTCAGAGGTGGGGGTTCCTCATTTTTGGTGGGCTCATATGGATTTACTTAACTGCAAGGCCAGGTGTTCTTATTGGTGCCATTGATGCATACCTTCTGGCTCCTATTCAACTGGGTTTGGACAATCTATCTGGAAGGAGAAACTTGAAGAGGAGTGATTTTCTGGTTGGAGATAAGCTTGGTGAAGGGTCATTTGGTGTTGTTTATTCAGGTGTTTTGGCTTCAAAGAATGTGGATGTAGAAGAGAGGGTGCAGAAGAGGGGAAGAGGCAAGGCAACGACACAGTTGGATGTGAAATCTAAGGATAAAGTCATTCTTAAAAAGGTTAAGGTTGGAATCCAAGGGGCCGAAGAATTTGGTGATTTTGAGGAGTGGTTCAACTACAGGCTATCTAGAGCAGCACCTGAAACATGTGCTGAGTTCCTTGGAAGTTTTGTAGCTGATAAAACAAATTCACAGTTCACAAAAGGTGGAAAATGGCTTGTTTGGAAGTTTGAGGGAGACCGCACTCTTGCTGATTACATGAAAGATCGCAACTTCCCTTCAAACTTAGAATCTGTCATGTTTGGACGTGTCTTGCAAGGTGTAGACTCTTCTAAACGAAATGCATTGATCATCAAGCAAATAATGCGCCAGATCATTACTTCTCTTAAGAAAATTCATGATACTGGCATTGTTCACAGGGATGTAAAGCCAGCTAACTTAGTGGTTACAAAACGGGGGCAGATTAAACTCATTGATTTTGGTGCAGCAACAGACCTGCGGATTGGAAAGAATTATGTTCCCAACCGCATCCTTTTGGATCCTGATTATTGCCCCCCAGAATTGTATGTACTCCCAGAAGAAACACCAAGTCCTCCACCAGAGCCAATTGCTGCTTTCCTGTCACCAATCCTGTGGCAGTTAAACAGCCCTGATCTGTTTGATATGTATTCTGCTGGGATTGTACTCCTGCAAATGGCAATACCAAGTTTAAGGTCTCCTGCTGCTTTGAAGAATTTCAATTTGGAAATGAAAAATTGTGGATATGATTTGAAAAAATGGAGGGACTTTACTCGCCTCAGGCCTGACTTCCAAATTCTTGATAGCGAATCTGGTAGAGGGTGGGACTTAGCAACAAAGCTTATCTCTGAGAGAGGTTCCTTAAGAAGAGGACGTTTATCTGCTGCTGCTGCTTTGAGACATCCTTATTTTCTTCTTGGTGGTGATCAGGCAGCTGCAGTCCTTTCAAAATTAAGCTTAAGCAGAAAGTGA 1530 0.4248 MNAMASLLPPTATATTTIQHNQMTICFSPLKPFTPNNVSFLTNRFKSNPAKCNALFDSVAKGLLENTVSLDQFPSLQSGLVQFQRVTEDLSDIQRWGFLIFGGLIWIYLTARPGVLIGAIDAYLLAPIQLGLDNLSGRRNLKRSDFLVGDKLGEGSFGVVYSGVLASKNVDVEERVQKRGRGKATTQLDVKSKDKVILKKVKVGIQGAEEFGDFEEWFNYRLSRAAPETCAEFLGSFVADKTNSQFTKGGKWLVWKFEGDRTLADYMKDRNFPSNLESVMFGRVLQGVDSSKRNALIIKQIMRQIITSLKKIHDTGIVHRDVKPANLVVTKRGQIKLIDFGAATDLRIGKNYVPNRILLDPDYCPPELYVLPEETPSPPPEPIAAFLSPILWQLNSPDLFDMYSAGIVLLQMAIPSLRSPAALKNFNLEMKNCGYDLKKWRDFTRLRPDFQILDSESGRGWDLATKLISERGSLRRGRLSAAAALRHPYFLLGGDQAAAVLSKLSLSRK. 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10069 509 Pfam Protein kinase domain 297 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10069 509 ProSitePatterns Serine/Threonine protein kinases active-site signature. 317 329 IPR008271 GO:0004672|GO:0006468
Seca4g10069 509 Gene3D Phosphorylase Kinase; domain 1 134 257 - -
Seca4g10069 509 SUPERFAMILY Protein kinase-like (PK-like) 143 491 IPR011009 -
Seca4g10069 509 PANTHER SERINE/THREONINE-PROTEIN KINASE STN8, CHLOROPLASTIC-RELATED 54 509 - -
Seca4g10069 509 ProSiteProfiles Protein kinase domain profile. 146 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10069 509 SMART serkin_6 146 490 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10069 509 Gene3D Transferase(Phosphotransferase) domain 1 288 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10069 Seca-Chr4 233972928 233977760 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10069 146 346 MAP Kinase Kinase Kinase AT3G13530 25.000 2.36e-11 64.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-4 Seca4g10069 Pkinase 1.6e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10069 - - gmx:100786843 780.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g10069 4 233972928 233977760 Seca4g10069 4 233972928 233977760 ECH