Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10068 ATGGAGAAGACAGGAGTGGTAGTATTATCGGCGAAGGAAGCATTCGAGAAGCTTGAGAAGGTTGGAGAAGGGACATATGGGAAAGTGTACAGAGCAAGAGAGAAGGCCACTGGGAAGATCGTTGCTCTCAAGAAGACTCGCCTCCATGAGGACGAAGAAGGTGTCCCTCCCACCACTCTTCGTGAAGTTTCCATTCTCCGAATGCTCTCCCGCGATCCCCATGTCGTCAAGTTAATGGATGTGAAACAGGGTCAGAACAAGGAAGGGAAGACCGTCCTCTACTTGGTCTTCGAGTACATGGATACCGATCTCAAGAAATACATTCGTACTTTCCGCCAAACCGGAGAAAACATCCCACCCAAAACCATCAAAGTATCTTCATTTTTTTCTTTCTTTTCTCAATGTTCTTGTTGTTCTGAGGGAGGTTTTATATCAATTTCGTCGATTTGGTTGCAGAGCTTGATGTACCAACTTTGCAAGGGTGTTGCTTTCTGCCACGGCCATGGAATCTTGCACAGGGACTTGAAGCCTCACAATCTCTTGATGGACCGAAAAACAATGATGCTTAAAATAGCTGACCTTGGACTTGCTCGAGCGTTTACTGTGCCAATTAAGAAGTACACGCATGAGATACTAACCCTGTGGTATAGAGCTCCTGAAGTTCTTTTGGGTGCTACCCATTACTCAATGGCAGTGGATATGTGGTCCGTTGCCTGCATATTTGCCGAACTTGTCACCAAGCAAGCACTCTTTCCTGGTGATTCTGAGCTGCAACAACTCCTTCATATATTCAGGCTGTTGGGCACTCCTAACGAAGAGGTGTGGCCAGGTGTTAGTAAACTGATGAACTGGCATGAGTACCCCCAGTGGAGCCCTCAGAGTATTTCAACTGCTGTTCCAACTTTGGATGTGCTTGGACTTGATCTATTATCTCAAATGTTGCAATATGAACCTTCCAAGCGAATTTCTGCAAAGAAAGCTATGGAACACCCTTACTTCGATGATCTGGACAAGACCTATCTTTAG 1026 0.4571 MEKTGVVVLSAKEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHVVKLMDVKQGQNKEGKTVLYLVFEYMDTDLKKYIRTFRQTGENIPPKTIKVSSFFSFFSQCSCCSEGGFISISSIWLQSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEILTLWYRAPEVLLGATHYSMAVDMWSVACIFAELVTKQALFPGDSELQQLLHIFRLLGTPNEEVWPGVSKLMNWHEYPQWSPQSISTAVPTLDVLGLDLLSQMLQYEPSKRISAKKAMEHPYFDDLDKTYL. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10068 341 Gene3D Phosphorylase Kinase; domain 1 10 101 - -
Seca4g10068 341 Pfam Protein kinase domain 15 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10068 341 SUPERFAMILY Protein kinase-like (PK-like) 11 337 IPR011009 -
Seca4g10068 341 ProSiteProfiles Protein kinase domain profile. 15 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10068 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 170 182 IPR008271 GO:0004672|GO:0006468
Seca4g10068 341 FunFam Cyclin-dependent kinase 2 142 340 - -
Seca4g10068 341 Gene3D Transferase(Phosphotransferase) domain 1 145 340 - -
Seca4g10068 341 SMART serkin_6 15 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10068 341 FunFam Cyclin-dependent kinase B2,2 11 101 - -
Seca4g10068 341 PANTHER CELL DIVISION PROTEIN KINASE 13 334 - -
Seca4g10068 341 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10068 Seca-Chr4 233967058 233969568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10068 1 341 Core Cell Cycle Gene Families AT1G20930 77.843 0.0 543
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Seca4g10068 Pkinase 3.6e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10068 K07760 - gmx:100808302 581.637