Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10052 ATGAACAACAATTCATTTAATGGTCAAATTCCACACGACCTTTCAAAGCTACCCAAGCTTCAGCACTTGCTTGTGGACAATAATAACTTGTCTGGCTATCTTCCACCAGAATTCTCCATGTTGCCAGAATTGCGTATACTCCAACTTGATAACAATAATTTCAGCAGGACTGGAATTCCTTCTACCTATGCAAACTTATCCAGACTTGTAAAACTAAGTCTAAGAAACTGCAGTTTGCAAGGAGCTATTCCTGATTTCAGTTCAATATCCAATCTTAGTTATATAGATCTTAGTTGGAACCTTCTTACTGGACCTATACCATCAAATAAACTTTCAGACAATATAACCACTATTGATCTGTCCAATAATTATCTCAATGGATCAATCCCAAGAAGCTTCTCATATCTTCCACGTCTTCAAGAACTGTCACTAAAGAACAACTTCTTGTCCGGGTCCATACCTACTAGTATATGGAAGAACATGTCCTTCAGTATGAATGCTAAACTTGCAGTTGATCTCCGTAACAACTCACTTTCAGACATTTTGGGATATATGAACCCCCCAGAAAATGTCACCTTGAGGCTTGCTGGCAATCCTATCTGCAAGAACTCTAGCACGCAAAATATTGATCAATTCTGCAGAACTGAAGCAGATAAAGGTGCCAAAGACTCAACAAGTTCAACAGTTCACTGTCCAGTGCAAGCTTGTCCTGTTGACAATTTCTTTGAATATGTTCCAGCTTCCCCCATTCCCTGCTTTTGTGCATCTCCTCTGAGAATTGGATACCAGCTGAAAAGCCCAAGTTTTTCTTATTTTCCTCCATATAGAACTTCTTTTGAACTATATATTACTCAGTCTTTAAACTTAGACCACTATCAACTATCAATAGATTCGTATGCTTGGGAAGAGGGACCTCGTCTTTCAATGTATTTAAAACTTTTTCCTTCATTCAATGATTCTCACTCAAGCGTGTTCAATTCAAGTGAGGTCCATCGTATTTTAGGGATATTTACATCATGGAAATTTCATCGCAATGATTTATTTGGACCATATGAACTCCTAAACGTCACTCTGCTGGGACCTTATGCAAATTTAAATGTTGAGTCAGAGGGGAGTAAAACTAGTGCAAGCATATTAATAGCTGCTACTGTAGCATCTGTTGCTTGTGCAATAGCAATATCTGCATTAGTGACTTTCCTGATTGCTAGAAGATGTGCCAAATGCCAATACCAGCTTTCCAGGAAACGTATGTCCTCTGATAAATCCATCAGAATTGTTGGTATGAAAACATTTACATTTAAAGAATTGGCTCTAGCTACTGACAAATTTAGCAGCTCGAATAGAGTTGGCACAGGTGGTTATGGGAATGTTTATAAAGGCATTTTGTCTGATGATACACCTGTGGCCATAAAGCGAGCCGAAGAAGGCTCCTTACAAGGTCAAAAGGAATTTTTGACTGAGATTGAGCTTTTATCAAGGTTACATCATCGAAATCTTGTCTCATTGATTGGGTACTGTAATGAAAAAGGGGAGCAGATTCTGGTTTATGAATTCATGCCCAATGGCACACTACGGGAGTGGATCTTTGGTAAAAGTAAAACCAAGGAAAGCCTCAATTTTGGTACAAGATTAAGAATTGCAATGGATTCAGCCAAAGGCATACTATATCTGCATACTGAGGCTAACCCTCCTATATTTCACCGAGATATTAAGGCCAGTAATATACTTCTTGATTCCAATTTCACTGCAAAAGTAGCTGACTTTGGACTCTCACGGCTTGTACCATACCTTGATGATGAAGGAACTATGCCCAAGTATGTGTCAACAGTTGTGAGGGGAACACCTGGTTACCTGGATCCTGAGTACTTACTGACTCACAAGTTGACAGACAAATGTGATGTTTATAGCTTGGGAATTGTGTTTCTGGAGCTTTTGACCGGCATGAAACCAATATCACACGGAAAAAACATTGTTCGTGAGGTTAATGCAGCATGTCAGTCTGGTATGACACTTTCCATCATAGACAGCAGGATGGGGTGCTATCCATCTGATTGTGTTGAGAAGTTTTTGACTCTGGCTCTCAGTTGTTGCCATGACAATCCAGAGGAGAGACCTTCAATGCCAGATGTGGTAAGGGAGCTGGAAAATATTCTTGAAATGTTGCAAGAAACTGAAACTAATTCCTCAGATGTTACCTCTGAAAGTTCTGGTAATCAGCATCCTACCTGA 2229 0.3948 MNNNSFNGQIPHDLSKLPKLQHLLVDNNNLSGYLPPEFSMLPELRILQLDNNNFSRTGIPSTYANLSRLVKLSLRNCSLQGAIPDFSSISNLSYIDLSWNLLTGPIPSNKLSDNITTIDLSNNYLNGSIPRSFSYLPRLQELSLKNNFLSGSIPTSIWKNMSFSMNAKLAVDLRNNSLSDILGYMNPPENVTLRLAGNPICKNSSTQNIDQFCRTEADKGAKDSTSSTVHCPVQACPVDNFFEYVPASPIPCFCASPLRIGYQLKSPSFSYFPPYRTSFELYITQSLNLDHYQLSIDSYAWEEGPRLSMYLKLFPSFNDSHSSVFNSSEVHRILGIFTSWKFHRNDLFGPYELLNVTLLGPYANLNVESEGSKTSASILIAATVASVACAIAISALVTFLIARRCAKCQYQLSRKRMSSDKSIRIVGMKTFTFKELALATDKFSSSNRVGTGGYGNVYKGILSDDTPVAIKRAEEGSLQGQKEFLTEIELLSRLHHRNLVSLIGYCNEKGEQILVYEFMPNGTLREWIFGKSKTKESLNFGTRLRIAMDSAKGILYLHTEANPPIFHRDIKASNILLDSNFTAKVADFGLSRLVPYLDDEGTMPKYVSTVVRGTPGYLDPEYLLTHKLTDKCDVYSLGIVFLELLTGMKPISHGKNIVREVNAACQSGMTLSIIDSRMGCYPSDCVEKFLTLALSCCHDNPEERPSMPDVVRELENILEMLQETETNSSDVTSESSGNQHPT. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10052 742 Gene3D Transferase(Phosphotransferase) domain 1 519 739 - -
Seca4g10052 742 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 519 730 - -
Seca4g10052 742 SUPERFAMILY Protein kinase-like (PK-like) 423 721 IPR011009 -
Seca4g10052 742 PANTHER RECEPTOR-LIKE PROTEIN 55 1 718 - -
Seca4g10052 742 Pfam Protein kinase domain 445 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10052 742 SMART serkin_6 443 721 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10052 742 SUPERFAMILY L domain-like 2 203 - -
Seca4g10052 742 FunFam Leucine-rich repeat protein kinase family protein 407 518 - -
Seca4g10052 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 565 577 IPR008271 GO:0004672|GO:0006468
Seca4g10052 742 Gene3D Ribonuclease Inhibitor 1 109 IPR032675 -
Seca4g10052 742 ProSitePatterns Protein kinases ATP-binding region signature. 449 471 IPR017441 GO:0005524
Seca4g10052 742 ProSiteProfiles Protein kinase domain profile. 443 718 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g10052 742 CDD STKc_IRAK 449 717 - -
Seca4g10052 742 Gene3D Phosphorylase Kinase; domain 1 413 518 - -
Seca4g10052 742 Gene3D Ribonuclease Inhibitor 110 236 IPR032675 -
Seca4g10052 742 SMART LRR_typ_2 17 40 IPR003591 -
Seca4g10052 742 SMART LRR_typ_2 41 65 IPR003591 -
Seca4g10052 742 SMART LRR_typ_2 136 160 IPR003591 -
Seca4g10052 742 MobiDBLite consensus disorder prediction 722 742 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10052 Seca-Chr4 233561005 233568031 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10052 1 726 Receptor kinase-like Gene Family AT5G01950 63.512 0.0 895
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca4g10052 Pkinase 1.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10052 - - gmx:100815005 1117.45