Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10042 ATGAACACCAAACTTTCCCATGGTCCAATTCACTTCCATGCCCCTGCCAAGATATTCTGGCGCACTGTTCGTGGGTCATTTGTTTATAGAATGATACCACATAAGACAAAGTGTGGGGGTTTGAAGGTTTATGAGGGAATCCCTCCTCCATATGACAAGATGAAGAGAATGGTTGTCCCTGATGCTCTCAAGGTGTTGAGGCTCCAGAAAGGACACAAGTACTGCCTGTTGGGTAGATTGTCATATGAGGTTGGATGGAACTACCATGACACCATCAGGGTAAGTTCTCTGCTTCCTTTTCCTCAATGCTACTACTGA 318 0.4528 MNTKLSHGPIHFHAPAKIFWRTVRGSFVYRMIPHKTKCGGLKVYEGIPPPYDKMKRMVVPDALKVLRLQKGHKYCLLGRLSYEVGWNYHDTIRVSSLLPFPQCYY. 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10042 105 Gene3D Ribosomal protein L13 1 88 IPR036899 GO:0003735|GO:0005840|GO:0006412
Seca4g10042 105 PANTHER RIBOSOMAL PROTEIN L13 1 93 IPR005822 GO:0003735|GO:0005840|GO:0006412
Seca4g10042 105 SUPERFAMILY Ribosomal protein L13 1 88 IPR036899 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10042 Seca-Chr4 233454811 233455558 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10042 1 93 Cytoplasmic Ribosomal Protein Gene Family AT4G13170 76.531 4.61e-49 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10042 K02872 - mnt:21386595 158.688