Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10036 ATGGGACGTGAAGATACGAAGAAGAAGAAGAAGAAGAATGCAAAATCCGGTGGTTTTGAGTCACTGGGTCTGAATCCGAATGTGTTCAAAGGAATCAAACGCAAAGGGTACAAAGTGCCCACTCCAATTCAGAGGAAGACCATGCCCCTCATCCTTTCTGGCTCCGATGTTGTTGCCATGGCTCGTACTGGTTCTGGTAAAACGGCAGCGTTTCTTGTCCCCATGATTCACCGCCTCAACCAGCATCTTCCTCAGGGTGGCGTTAGAGCCCTCATTTTGTCCCCTACTAGGGACTTGGCCCTTCAGACTCTCAAGTTCACCAAAGAGCTTGGCCACTTCACAGACCTTCGAGTCAGTTTGTTAGTTGGTGGTGATAGTATGGAAAGTCAGTTTGAGGAGTTAGCTCAGAGTCCTGACATTATAATTGCCACTCCTGGTAGGCTTATGCACCATTTGTCTGAGGTTGATGATATGACCTTGCGTACTGTCGAGTATGTTGTTTTTGACGAGGCCGATTGTTTGTTCGGCATGGGTTTTGCTGAGCAATTGCATCAAATTCTTGCTCAGCTTGGTGAGAATCGCCAGACCTTGCTTTTCAGTGCTACTTTGCCTAGCGCACTTGCTGAATTTGCTAAGGCTGGTTTGAGAGACCCTCAGCTTGTTCGGCTGGATGTGGAAACTAAGATTAGCCCTGACTTGAAGCTTGCCTTTTTCACTTTGAGGCAGGAAGAGAAGTATGCGGCATTGCTCTATTTGGTCAGGGAGCATATTGGTTCTGATCAGCAGACATTAATTTTTGTATCCACAAAGCATCATGTGGAATTTCTCAACGTATTGTTTCGGGAAGAGGGTATTGAGCCATCTGTATGTTATGGTGACATGGATCAAGATGCTCGCAAAATTCATGTATCAAGGTTTAGGGCAAGAAAGACGATGTTGTTGATTGTGACGGACATTGCAGCTCGGGGAATTGACATTCCACTGCTTGATAATGTTATCAATTGGGACTTCCCTCCAAAGCCTAAAATATTTGTTCATCGAGTTGGAAGGGCTGCAAGGGCTGGTCGTACTGGTACTGCTTATTCTTTTGTGACTTCAGAGGATATGGCTTACCTTTTGGATCTTCATCTGTTTCTCTCAAAACCAATCAAAGCTGCTCCCACTGAAGAAGAGGTCTTGCAGGATATGGATGGAGTGAAGTCAAGAATTGACCAGGCCATGGCAAACAGAGAAACCATATATGGTCGTTTCCCCCAAAAAGTCATTGACCTTGTTTCTGATAGAGTTAGGGAAGTTATTGATACTTCTGCAGAACTGGAATCATTGCAGAGAACCTGTAACAATGCATTTCGTTTATATTCAAAGACAAAACCCTTACCCTCAAAGGAGTCCATTAGAAGAGTAAAGGATTTACCCCGTGAAGGGCTGCATCCAATTTTCAATAATGTGTTGGAAACAGGGGAGTTAATGGCACTTGCATTTTCTGAGCATTTGAAAAAGTTTAGGCCAAAGCAGACCATTTTGGAAGCTGAGGGCGAAACATCTAAATCAAAGCATCTACAGGGCCCTTCTGGCCAATGGGTTGATGTGATGAAAAGGAAAAGAGCCATTCATGAGAATATTATAAATTTGGTTCATGAACAGCATTCTAAGAGTAATAAGGAAAAGGAGGAAATTCAATCGGAAACCACTCCTTTTGTGGAGAAAGGGAGAAAAGCAGCATGTGGCTCTAAGAGAAAGCCCCAAAGTTTCAAGGATGAGGATTATTATATAAGTTCAATACCTAAAAATCAACACACGGAGGCAGGCCTTTCAGTAAAAGCTAATGACGACTTTACTTCAAATAGATTGGAAGCTGCTGTCCTAGATCTAGTTGCAGATGATAGTACTGGCATTAAGAAACAAAGATCTGTATATCACTGGGATAAGAGAAGTAAAAAGTACATCAAGTTAAACAATGGTGAGCGTGTTGCTGCAAATGGAAAGATAAAGACAGAGAGTGGTGCAAAAACGAAAGCCACCAAGACTGGCATATATAAAAAGTGGAAAGAACGGTCACACAGTAAGATATCTCTTAGAGGGACAAATACTGATGGTGAAGCTCAGGAATCAAGAAGTTCGACAGCATCTTACCGAGGAGGTCGAAGGAATTTTAGAGGCGGCAAGAAGCAGAATTCAATGCCCAATGCTCATGTGCGTTCAGAAATCAAAGATATGGATCAAATTCGAAAGGAGAGGCAGAAAAAAGCCAACAAAATTTCTTATATGAAGAGCAAGTCACAAAAGGGTAAAAAATTTGGCAAAAATGGGAAAAAAAGAAAAGCCAAATAG 2331 0.4256 MGREDTKKKKKKNAKSGGFESLGLNPNVFKGIKRKGYKVPTPIQRKTMPLILSGSDVVAMARTGSGKTAAFLVPMIHRLNQHLPQGGVRALILSPTRDLALQTLKFTKELGHFTDLRVSLLVGGDSMESQFEELAQSPDIIIATPGRLMHHLSEVDDMTLRTVEYVVFDEADCLFGMGFAEQLHQILAQLGENRQTLLFSATLPSALAEFAKAGLRDPQLVRLDVETKISPDLKLAFFTLRQEEKYAALLYLVREHIGSDQQTLIFVSTKHHVEFLNVLFREEGIEPSVCYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPKPKIFVHRVGRAARAGRTGTAYSFVTSEDMAYLLDLHLFLSKPIKAAPTEEEVLQDMDGVKSRIDQAMANRETIYGRFPQKVIDLVSDRVREVIDTSAELESLQRTCNNAFRLYSKTKPLPSKESIRRVKDLPREGLHPIFNNVLETGELMALAFSEHLKKFRPKQTILEAEGETSKSKHLQGPSGQWVDVMKRKRAIHENIINLVHEQHSKSNKEKEEIQSETTPFVEKGRKAACGSKRKPQSFKDEDYYISSIPKNQHTEAGLSVKANDDFTSNRLEAAVLDLVADDSTGIKKQRSVYHWDKRSKKYIKLNNGERVAANGKIKTESGAKTKATKTGIYKKWKERSHSKISLRGTNTDGEAQESRSSTASYRGGRRNFRGGKKQNSMPNAHVRSEIKDMDQIRKERQKKANKISYMKSKSQKGKKFGKNGKKRKAK. 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10036 776 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 245 394 IPR001650 -
Seca4g10036 776 MobiDBLite consensus disorder prediction 733 752 - -
Seca4g10036 776 Pfam Helicase conserved C-terminal domain 245 355 IPR001650 -
Seca4g10036 776 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 221 IPR014001 -
Seca4g10036 776 SMART DBP10CT_2 623 685 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Seca4g10036 776 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 17 45 IPR014014 GO:0003724
Seca4g10036 776 Pfam DBP10CT (NUC160) domain 623 684 IPR012541 GO:0003723|GO:0003724|GO:0005524|GO:0005634
Seca4g10036 776 CDD DEADc_DDX54 17 222 IPR033517 -
Seca4g10036 776 MobiDBLite consensus disorder prediction 753 776 - -
Seca4g10036 776 CDD SF2_C_DEAD 240 364 - -
Seca4g10036 776 Gene3D - 236 467 IPR027417 -
Seca4g10036 776 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 4 688 - -
Seca4g10036 776 MobiDBLite consensus disorder prediction 685 776 - -
Seca4g10036 776 Gene3D - 2 224 IPR027417 -
Seca4g10036 776 MobiDBLite consensus disorder prediction 549 565 - -
Seca4g10036 776 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 87 373 IPR027417 -
Seca4g10036 776 SMART helicmild6 274 355 IPR001650 -
Seca4g10036 776 SMART ultradead3 36 243 IPR014001 -
Seca4g10036 776 Pfam DEAD/DEAH box helicase 41 208 IPR011545 GO:0003676|GO:0005524
Seca4g10036 776 MobiDBLite consensus disorder prediction 692 713 - -
Seca4g10036 776 MobiDBLite consensus disorder prediction 549 580 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10036 Seca-Chr4 233347993 233356187 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10036 19 388 Eukaryotic Initiation Factors Gene Family AT1G72730 31.989 1.02e-57 201
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10036 K14808 - gmx:100806274 1337.4