Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g10002 ATGGAAGATTCAGTTCCAATTTTAACAAAATCTGATTCTATTGAGCAGGAAAAATTGATTCCCTCATCAGATGAAATGATAGAGAAGGGTTTGGGAAGGTTTGGATGGGTGGAGTTTGTGCAATGCATCCTTGTGTCATTTGCAATGTTCTTTGATGCACAACAATCATTCATAAGTATCTACTCTGATGACTACCCAACATGGCACTGCAATGACTTCACCACATGTAGCACAAGTTCTGATATCTGCAAGCTCCCAAAGTCTTCTTGGACTTGGGATGGACCTTCTTCTAAAACAATCATATCCCAATGGGGTCTTGAATGTGCTAGTAGCTTCATCACAGGGTTACCCCAATCTTCTTTCTTCATTGGTTGTCTTCTTGGTTCATTTCTTCTAGCCACATTGGCTGATACATCTCTTGGAAGAAAAAACATGCTCATTCTGTCTTGTTTATCTATGTCAATAACTTCAATAGTCATTGTGTTCTCCACCAATGTTTGGGTTTACTCAGCTTTCAAATTCCTCATTGGGTTTTGGCGTTCATCTATTGGAACATGTGTTCTGGTGTTACTAACAGAGAAAGTGAGCACAGAGTGGAGGTTCACTGTGGGGATTGTAGAATATTTCTGCTTCACATTGGGGTACATGTCCTTGCCTGGTATAGCTTATGTCAACAGAAATTCCTCATGGAAAACTCTTTATGTGTGGACATCAATTCCTGCTATTGTTTACTCAATCATTGCTTACATTTTTGTGACTGAGTCTCCAAGGTGGCTTCTCATGCAAGGTAGACAACAAGAAGCAATGGCAATGCTTAAAGGAGTTTCTTCAGTAGAAAGTGGTGCTGATGATTTGACTGCAAGTCTACTAAAAGCAACTCCTAAACAAAAGGCTTCAATTTTCCAACTCTACTCATCAATAGCAGAGATATTTGAGAGAAGTTGGGCTCTTAAAAGAATGATAGAGATTATGGTGCTTGGAATTGGCATTGGAATGGTGTATTTTGGCATGCCTTTAGCAGTGGGGAACTTGGGATTTGACATTTACTTAGCTGTTGTGTTTAATGCCTTGATGGAAATACCTTCTTGTGTGGCCACTTATTTCTTGGAAAACTGCAGAAGAAGACCATCTATTCTTGTATTCTCCATAGCAAGTGGCATATGCAGTATAATGAGTGTTGTTGTGGGCAATTGGCTACAAGGAGTTAAGGTGGGGCTATCATTGATATCATTCTTCAGTGCTTGCACAGCTTATAATGTGTTTCTCATATACATTATAGAGCTGTTTCCTACAAGTGTGAGGAACACTACAACCTCATTGGTGAGGCAAGCCATTGTATTTGGTAACATATTCAGCCCATTTTTAATATCTGCAGGGAGGAAAAATGACTTCTTTTCTTATGGGGTGTTTGGAATAGTTATAATTTCCTCCTGTATTACACTGCTTGGTTTGCCAGAGACCAAAGGAATAGCTCTTTGTGATACCATGGATCAACAAGAGAAAAAAGAGAACACATCTGTGTAA 1524 0.393 MEDSVPILTKSDSIEQEKLIPSSDEMIEKGLGRFGWVEFVQCILVSFAMFFDAQQSFISIYSDDYPTWHCNDFTTCSTSSDICKLPKSSWTWDGPSSKTIISQWGLECASSFITGLPQSSFFIGCLLGSFLLATLADTSLGRKNMLILSCLSMSITSIVIVFSTNVWVYSAFKFLIGFWRSSIGTCVLVLLTEKVSTEWRFTVGIVEYFCFTLGYMSLPGIAYVNRNSSWKTLYVWTSIPAIVYSIIAYIFVTESPRWLLMQGRQQEAMAMLKGVSSVESGADDLTASLLKATPKQKASIFQLYSSIAEIFERSWALKRMIEIMVLGIGIGMVYFGMPLAVGNLGFDIYLAVVFNALMEIPSCVATYFLENCRRRPSILVFSIASGICSIMSVVVGNWLQGVKVGLSLISFFSACTAYNVFLIYIIELFPTSVRNTTTSLVRQAIVFGNIFSPFLISAGRKNDFFSYGVFGIVIISSCITLLGLPETKGIALCDTMDQQEKKENTSV. 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g10002 507 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 35 497 - -
Seca4g10002 507 Gene3D MFS general substrate transporter like domains 40 497 IPR036259 -
Seca4g10002 507 Pfam Sugar (and other) transporter 94 492 IPR005828 GO:0016020|GO:0022857|GO:0055085
Seca4g10002 507 CDD MFS_OCT_plant 80 485 - -
Seca4g10002 507 SUPERFAMILY MFS general substrate transporter 99 492 IPR036259 -
Seca4g10002 507 ProSiteProfiles Major facilitator superfamily (MFS) profile. 41 488 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g10002 Seca-Chr4 233015175 233016698 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g10002 1 502 Organic Solute Cotransporters AT1G16390 49.020 0.0 516
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g10002 - - mtr:11431357 843.573