Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09998 ATGTCTGAAGGGTATTCTGCTTCGGACTCAGACTCCGACCCTGGTTGTTGTTCCAGCAGATCTGATGCTTCAGCTGAACTCAAGCTATACCGAGCCTTCATCTTCTCCGTTCCCATCTTCTTCACTCTCATTCTCCTCTTTCTCTTCTACGTCTTCTACCTTCGACCCCGAAGGGTTGATTGGTCCTCTCTTAGGATGAGGCCCTTCGGTGTTACACAGGACAATAACAATGCCATCTCCACGTCTGGTTTGGGGTTGAACAAAGAATTGAGAGAGATGCTACCTATTATTGTGTACAAGGAAAGCTTCTCTGTCAAAGATACTCTATGCTCAGTATGCCTTTTAGACTACCAACCAGAGGATAGACTTCAACAGATACCTGCATGTGGCCATACATTTCACATGAGCTGCATTGATCTTTGGCTTGCCAACCACAACACCTGCCCTCTTTGCCGCTTGTCCCTACTAACTACTGCTAAATCTTCAACAGAGACATCCAATATGCAGAGGCCACAGAGCAATGATGAAACACAGAGGCCACAGAACAATGAAGAAACACAGAGGCCACAGAGCAATGTAGAAACACAAGCCATGGAATTCTCTGGCGCAAGATCTTCTAGGCACATTGAATCCGCTGCTCTCCAGAATGTCTCTGGAGAAGTTGCAATCAGTGCCCATTGCATTGATGTTCAAGGGCAAAATGTGCAAAACAATCAAAGGAGCATGAATACATGA 735 0.4585 MSEGYSASDSDSDPGCCSSRSDASAELKLYRAFIFSVPIFFTLILLFLFYVFYLRPRRVDWSSLRMRPFGVTQDNNNAISTSGLGLNKELREMLPIIVYKESFSVKDTLCSVCLLDYQPEDRLQQIPACGHTFHMSCIDLWLANHNTCPLCRLSLLTTAKSSTETSNMQRPQSNDETQRPQNNEETQRPQSNVETQAMEFSGARSSRHIESAALQNVSGEVAISAHCIDVQGQNVQNNQRSMNT. 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09998 244 FunFam RING-H2 finger protein ATL7 75 157 - -
Seca4g09998 244 CDD RING-H2_EL5-like 110 152 - -
Seca4g09998 244 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 72 159 IPR013083 -
Seca4g09998 244 SMART ring_2 110 151 IPR001841 -
Seca4g09998 244 PANTHER RING-H2 FINGER PROTEIN ATL16 27 201 IPR044600 GO:0016567|GO:0016740
Seca4g09998 244 ProSiteProfiles Zinc finger RING-type profile. 110 152 IPR001841 -
Seca4g09998 244 MobiDBLite consensus disorder prediction 162 206 - -
Seca4g09998 244 SUPERFAMILY RING/U-box 94 157 - -
Seca4g09998 244 Pfam Ring finger domain 110 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09998 Seca-Chr4 232965147 232969629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09998 19 227 C3H Transcription Factor Family AT4G10150 49.309 7.68e-65 200
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09998 K19039 - gmx:100794211 282.722