Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09988 ATGGAAAGAGACTTTGATAGAGGATACATAAAGAAAGGGCCATGGAGTAGTGAAGAAGATGAAGTGTTGCTCAAGCATGTCAACAAGTATGGTCCAAGGGATTGGAGCTCCATTCGATCCAAAGGCTTGTTGCCTCGAACTGGAAAATCTTGTCGCCTTAGATGGGTTAACAAGCTTAGACCCAACTTGAAGACTGGTTGCAAGTTTTCAGCAGAGGAAGAAAGGGTGGTGATAGAATTACAGGCACAATTTGGGAACAAATGGGCCAAAATTGCTACGTATTTGCCAGGTAGAACAGACAATGATGTAAAGAACTTTTGGAGCAGCAGGAGAAAAAGGTTGGAGAGGACGTTGCAGCAACAGAGTCCACCACAATCAAAGCCGCAGAAAAACAAAGGAAAAGCTCCTCTTAATCAAGTACATGTTAAAGAGGTTCCTGCATGCAGTTCTAATCAGCCGGAGGAAAACCATTCTTACCCCATGCCCTATATGGGAAACACAGAGGTGTTTGAGATGGTCAACCTACCAGATTTGACAAAGCCAAACTACCAAAATTTGGAAAGTGATCTTAATGCAGTTAAGGTTGAGGCCACCCCACTTCACATGGTACCATCTTTTGAGTCTTCATCAGGGTACAACTTTCCTCTACTCCCTGAATCACAAATGGACTTTCCACTATTCCCTGAGTGCCAGGACCTTGTTCCGGAGCCCTTTGGCCTTAATTTTATTGATATGTTGGAGCAGAAAAAAGGTTCAGAATGTGTCTGGGGCGAGAAGTTTGGGATCAGGTCCACTACTCTTGGATTGGAAGGAAATTCGCAGAGTACAAGTTCAAACTGCTTGTTTAAGGACTTCCCAACTGAGATTTTTGAATACTTTGAGCATGTTCCAACCTCATCAGAACAATAA 909 0.4323 MERDFDRGYIKKGPWSSEEDEVLLKHVNKYGPRDWSSIRSKGLLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERVVIELQAQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERTLQQQSPPQSKPQKNKGKAPLNQVHVKEVPACSSNQPEENHSYPMPYMGNTEVFEMVNLPDLTKPNYQNLESDLNAVKVEATPLHMVPSFESSSGYNFPLLPESQMDFPLFPECQDLVPEPFGLNFIDMLEQKKGSECVWGEKFGIRSTTLGLEGNSQSTSSNCLFKDFPTEIFEYFEHVPTSSEQ. 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09988 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 60 115 IPR017930 -
Seca4g09988 302 ProSiteProfiles Myb-like domain profile. 7 59 IPR001005 -
Seca4g09988 302 FunFam Transcription factor GAMYB 67 137 - -
Seca4g09988 302 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Seca4g09988 302 SMART sant 65 113 IPR001005 -
Seca4g09988 302 SMART sant 11 61 IPR001005 -
Seca4g09988 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 55 IPR017930 -
Seca4g09988 302 ProSiteProfiles Myb-like domain profile. 68 111 IPR001005 -
Seca4g09988 302 Pfam Myb-like DNA-binding domain 12 57 IPR001005 -
Seca4g09988 302 Pfam Myb-like DNA-binding domain 68 108 IPR001005 -
Seca4g09988 302 MobiDBLite consensus disorder prediction 118 133 - -
Seca4g09988 302 Gene3D - 11 64 - -
Seca4g09988 302 CDD SANT 14 59 IPR001005 -
Seca4g09988 302 CDD SANT 68 107 IPR001005 -
Seca4g09988 302 MobiDBLite consensus disorder prediction 116 137 - -
Seca4g09988 302 PANTHER TRANSCRIPTION FACTOR DUO1 6 301 - -
Seca4g09988 302 FunFam MYB transcription factor 12 64 - -
Seca4g09988 302 Gene3D - 67 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09988 Seca-Chr4 232835255 232836861 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09988 10 298 MYB Transcription Factor Family AT3G60460 42.903 3.31e-66 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g09988 Myb_DNA-binding 3.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09988 K09422 - gmx:100793689 452.595