Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09987 ATGATTTTGAAGAAAATTGATGATCTTCCTGATGAAAAGTATCAAAAGCTGTCTGTGGTTCATGATCGAGTATCAACTGATTTTTTTCCGTTGAGTTTGATTTTGTTATTAGCTGCTGGTGCAATGCCTTCAATCATGTCACCTCAGTGGCAAGATAAGGCTACTGGTTTCTTTTCTTCCTCAGGGGTCAAGCTTAAGGAGGCTAGGGAATCAGCGGGAACATTTGTTGGTGAGGTTACAAAGGATACCAAGAGTAATGTTGCTGAAGTGGCAGGAAGAGTTGGAACAATGGTCAAAAGTAGGTGGGCACTTCTTCAGCAGCCGTCCACAAGACATGCTGTGCAGGATCGATTGATATCAGCTGCTGCAACGACTGGGACATTCCTAAGGAGAAGTTTCTCAGGGACAAAAGATAAAGTGGTTGTGGGAAAATCCAAGGTTGAAGAGGTGGCAAAAATAACAGCACAAAAAAGTAAGACCATCTTGACAGACATTGAAAGATGGCAGAAGGGAGTTGCAAGGACTGATGTATTTGGAGTTCCTATTGAGGTTACTGTGCAGAGGCAAGATTGCAGCAACCCTATTCCTCAGATATTAGTCAAATGTGCAGATTATCTTATAGTTTCAGGATTAAACTTGCCACATCTCTTTAAATCCGAAGGGGATAAAAAGGTTATTCAGCAGTTGGTTTCCCTATACAACCAAGATTCAACTGCTTCAGTACCAGAAGGCACAAATCCAGTTGATGTGGCAGCTCTTACAAAATATTATCTTGCTAGCCTTCCTGAGCCACTTACCACATTGGAGCTTTATGATGAGATCAAAAGTGCTCGATCCAGTATATATACCATGAGAAACATACTTAAGAAGCTTTCGAGTGTAAACTATATGACTCTGGAGTTTATAACAGCACTTCTACTCCGTGTTAGCCAGAAGTCACTTTTAAATAAGATGGATGCTCGGAGCCTTGCAATGGAAATGGCACCTGTTATTATGTGGCAAAAGGGACAGAGACCTGAATTCTATCGTCAATACTGGAATCAGATGTCAAAAAGTCCTTCCAAAAAGAGCTTGGATCCACCATCTGGTTCATGCACTGCCTGGGACATGCTTTCTGATGATGGTGAAGCCACAGATGCATCCTCTCCTATTCCATTGGATGATGGCACGCCAGTTGACTTTGGTGCAATTGAGGTTGTTCAGTTGCTCATAGAACATCACAATGCAATTTTTACGGATGCAAATGAGACTGTCTGGAAATGA 1263 0.4188 MILKKIDDLPDEKYQKLSVVHDRVSTDFFPLSLILLLAAGAMPSIMSPQWQDKATGFFSSSGVKLKEARESAGTFVGEVTKDTKSNVAEVAGRVGTMVKSRWALLQQPSTRHAVQDRLISAAATTGTFLRRSFSGTKDKVVVGKSKVEEVAKITAQKSKTILTDIERWQKGVARTDVFGVPIEVTVQRQDCSNPIPQILVKCADYLIVSGLNLPHLFKSEGDKKVIQQLVSLYNQDSTASVPEGTNPVDVAALTKYYLASLPEPLTTLELYDEIKSARSSIYTMRNILKKLSSVNYMTLEFITALLLRVSQKSLLNKMDARSLAMEMAPVIMWQKGQRPEFYRQYWNQMSKSPSKKSLDPPSGSCTAWDMLSDDGEATDASSPIPLDDGTPVDFGAIEVVQLLIEHHNAIFTDANETVWK. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09987 420 SMART RhoGAP_3 193 408 IPR000198 GO:0007165
Seca4g09987 420 Pfam RhoGAP domain 196 335 IPR000198 GO:0007165
Seca4g09987 420 Gene3D Rho GTPase activation protein 130 418 IPR008936 -
Seca4g09987 420 PANTHER AUXIN-REGULATED PROTEIN-LIKE 42 420 - -
Seca4g09987 420 SUPERFAMILY GTPase activation domain, GAP 175 411 IPR008936 -
Seca4g09987 420 CDD RhoGAP 196 335 - -
Seca4g09987 420 ProSiteProfiles Rho GTPase-activating proteins domain profile. 180 411 IPR000198 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09987 Seca-Chr4 232829217 232834948 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09987 - - gmx:100794806 674.855