Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09986 ATGGCCTCTTCAATTTTCCTTCATTCTTATTCTCTACTTCTAATTCTCCCCTTGCTCCCATCTGTGTTTAGTTCAAACTGTGATTTTCAGTTAAATTCGTCTCTACCCACCAGTAGCCAATCTTCATGGAATTCACCATCTGGGGAATTTGCCTTTGGTTTCAAAAGTGTTATATTCAATGACACACAAACCATGTCCGTGCTTTCCATTTGGTTTGCCAAAGATCCCAACCATACCATAGTATGGTATGCAAAAGCAGAACAAAATCCAGCTTTTCCTGCAGGGTCCACAGTGAATCTAACAAGCAAAGGAATTGCCATATATGATCCAAACGGCCATGAAATGTGGCACCGTCCAGAAAAGAATTATGCTGATGCCATAGTGTCTTGTGCTTCTATGCTAGATAATGGAAGTTTTGTTCTTCTAGATAAGAATGGTAAACAGGTTTGGGAGAGTTTTGATGAGCCCACTGATACTATTTTGCCTGGCCAGAATCTAGCTAAGCCAAAGATTTTCAGAGCTCGTCAATCAGACACAAGTTTTTATGATGGGAATTTCATGCTGGCATGGCAGAATGATAGCAATTTGGTTCTTTACTATTCACCACCACATTCTAAAACACATGACCCTTACTGGGCTACTGGAACTTCCAAAACTGAATCAGAGCTGATATTTGATGAGTCTGGACGCATGTACATCCAAAATAAGACAGGTGTAGCAATCAGTGAAGTCACAAAAGGTGTACCAAAAGACTCATGGTACATGGCTAGGATTGATTCTGATGGAGTTTTCAGACTTTATTATCACCCCAAAACTGAGACCAATGTTGCTGACAGCTGCTCAGGTTCAGGGTGGTGGAATATACTGCAACATTATCCACAAGATATTTGCCTTTCCTTCATTGAGGAAACTGGGAACGTTGTCTGTGGTTTTAACAGCTACTGTGTTACCATCAATGGGAAGACTAACTGTGAATGCCCTGATCATTACTCTCCTTTTACACATAACAATCTCACAGGTTGTAGACCAGATTTTCCACTGCCTAGCTGCAACAAAGAAGGGTGGGAGCAGGATAAGGATCTAGTAGATTTCAAGGAGTATAAAAATTTGGACTGGCCTCTCTCTGATTATGATCTGCTTATTGGTGATGCAATGGACAAGGATATGTGTAAACAAAAATGCCTTGAGGATTGCTTCTGTTCTGTAGCCATATATAATGATGAGGGAAGATGTTGGAAAAAGAAATATCCTTTGAGTAATGGAAGGAAACACCCTAGTGTCAATAGAATAGCACTTGTCAAGGTACCAAAAACAAGTTTGATCAAGCCTGACAAAGAACAGTCTACCTTAGTGCTTGTCATATCAATACTTCTTGGGAGCTCTGTGTTCCTCAATGTCTTTCTATTTGTTGCTTTTTTTGCAGCCTTTTTCTTCTTCTACCACAGGAAACTTTTGAATCCAAGCTTGTCAGCTGCAACAACAACAAGGTGTTTTACATACAAGGAGCTTGAAGAAGCAACTTCAGGCTTCAAACAAATATTGGGTAGGGGTGCTTTTGGAACGGTATATAAAGGGGTATTAAAATCAGATACCAGCAGATTTGTTGCTGTCAAAAAGCTTGATAAGGTTTTGCAAGAAGGTGAAAAGGAATTCAAAACAGAAGTGAGTGTGATTGGCCAAACCCACCACAGGAATTTGGTTCGTTTACTTGGTTACTGTGATGAAGGGGAGCATCGCCTTTTGGTCTATGAGTATATGAGTAATGGCTCACTAGCAAGTTTTCTCTTTGGGATTTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTTTAGGAATTGCAAGAGGTCTCACATATTTGCATGAAGAGTGCAGCACTCAGATCATTCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGAGTTATTCACTCCAAGAATTTCTGATTTTGGATTAGCAAAGCGATTGTTGGCTGAGCAAACTAGAGCTGCTAAGACAGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTTAGGAAAGCTTCAATCACAACTAAAGTGGATGTTTACAGTTTTGGAATTCTGCTGCTAGAGATCATATGCTGCAAATCAAGTGTTGCCTTTGCAATGGCAAATGAAGAAGAAGCACTCCTAGATTGGGCATATCATTGTTATAGCCAAGGAAAAGTAGCTAAATTGGTAGAAAATGATGAGGAGGCAAAGAATGACATAAAGAGGGTAGAAAAACATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACTAAGACCCTCCATGAAGAAGGTCACCCAAATGCTTGAGGAAGTTACTGCAGTTTCTGTGCCTCCTCGCCCTTCCATGTTCAGTGTACAAGTTGAAACTTCATTTACTAACTACTGA 2415 0.4025 MASSIFLHSYSLLLILPLLPSVFSSNCDFQLNSSLPTSSQSSWNSPSGEFAFGFKSVIFNDTQTMSVLSIWFAKDPNHTIVWYAKAEQNPAFPAGSTVNLTSKGIAIYDPNGHEMWHRPEKNYADAIVSCASMLDNGSFVLLDKNGKQVWESFDEPTDTILPGQNLAKPKIFRARQSDTSFYDGNFMLAWQNDSNLVLYYSPPHSKTHDPYWATGTSKTESELIFDESGRMYIQNKTGVAISEVTKGVPKDSWYMARIDSDGVFRLYYHPKTETNVADSCSGSGWWNILQHYPQDICLSFIEETGNVVCGFNSYCVTINGKTNCECPDHYSPFTHNNLTGCRPDFPLPSCNKEGWEQDKDLVDFKEYKNLDWPLSDYDLLIGDAMDKDMCKQKCLEDCFCSVAIYNDEGRCWKKKYPLSNGRKHPSVNRIALVKVPKTSLIKPDKEQSTLVLVISILLGSSVFLNVFLFVAFFAAFFFFYHRKLLNPSLSAATTTRCFTYKELEEATSGFKQILGRGAFGTVYKGVLKSDTSRFVAVKKLDKVLQEGEKEFKTEVSVIGQTHHRNLVRLLGYCDEGEHRLLVYEYMSNGSLASFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDELFTPRISDFGLAKRLLAEQTRAAKTGLRGTIGYFAPEWFRKASITTKVDVYSFGILLLEIICCKSSVAFAMANEEEALLDWAYHCYSQGKVAKLVENDEEAKNDIKRVEKHVMVAIWCIQEDPSLRPSMKKVTQMLEEVTAVSVPPRPSMFSVQVETSFTNY. 805
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09986 804 Gene3D Phosphorylase Kinase; domain 1 484 585 - -
Seca4g09986 804 SMART ntp_6 359 435 IPR003609 -
Seca4g09986 804 ProSitePatterns Serine/Threonine protein kinases active-site signature. 628 640 IPR008271 GO:0004672|GO:0006468
Seca4g09986 804 Gene3D Transferase(Phosphotransferase) domain 1 586 786 - -
Seca4g09986 804 SUPERFAMILY Protein kinase-like (PK-like) 491 779 IPR011009 -
Seca4g09986 804 ProSiteProfiles Bulb-type lectin domain profile. 28 154 IPR001480 -
Seca4g09986 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 177 287 IPR036426 -
Seca4g09986 804 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 216 IPR036426 -
Seca4g09986 804 ProSitePatterns Protein kinases ATP-binding region signature. 514 539 IPR017441 GO:0005524
Seca4g09986 804 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 37 789 - -
Seca4g09986 804 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 586 786 - -
Seca4g09986 804 Pfam Protein kinase domain 511 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09986 804 CDD PAN_AP_plant 356 436 - -
Seca4g09986 804 CDD STKc_IRAK 514 780 - -
Seca4g09986 804 PIRSF SRK 1 803 IPR024171 GO:0004674
Seca4g09986 804 ProSiteProfiles Protein kinase domain profile. 508 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09986 804 FunFam S-receptor-like serine/threonine-protein kinase 482 585 - -
Seca4g09986 804 SMART serkin_6 508 782 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09986 804 Gene3D - 23 154 IPR036426 -
Seca4g09986 804 SMART blect_4 34 156 IPR001480 -
Seca4g09986 804 Pfam D-mannose binding lectin 79 171 IPR001480 -
Seca4g09986 804 Coils Coil 733 753 - -
Seca4g09986 804 Gene3D - 156 281 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09986 Seca-Chr4 232821629 232824043 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09986 477 779 Receptor kinase-like Gene Family AT1G60800 44.373 1.13e-71 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g09986 Pkinase 5.7e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09986 - - gmx:100796323 1272.3