Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09984 ATGGCCTCCTTAACTCTTGTTCATTCTTGTTCTCTGCTTCTTCTAATTCTCCCCTTGCTGCCATCTGTGTTTAGTTCAAACTGTGATGTACAGTTAAATTCCTCTCTACCCACCAATAGCCAATCTTCATGGAATTCACCATCTGGGGAATTTGCCCTTGGTTTCAAAAGTGTTATATTCACTGACACACAAACCATGTCCGTGCTTTCCATTTGGTTTGCCAAAGATCCCAACCATACCATAGTATGGTATGCAAAAGCAGAAAAAAGTCCAGCTTTTCCTGCAGGGTCCACAGTGAATCTGACAAGCAAAGGAATTGTTGTATATGATCCAAAAGGCAATGATATGTGGCATCGTCCAGAAAATAACGCTGGTGATGCCATAGTGTCTTGTGCTTCTATGCTAGATAATGGAAGTTTTGTTCTTCTAGATAAGGATGGTAAACAGCTTTGGGAGAGTTTTGATGAACCCACTGATACTATTTTGCCTGGCCAGAATCTAGCTAAGCCAAAGATTTTCAGAGCTCGTCATTCAGACACAAGTTTTTATGATGGGAATTTCATGCTAGCATGGCAGAATGATAGCAATTTGGTTCTTTACTATTCACCACCAGATTCTAAAACACAAGAACCTTACTGGGCTACTGGAACTTCCAAAACTGAATCAGAGCTGATATTTGATGAGTCTGGACGCATGTACATCCAAAATAAGACAGGTGTAGCAATCAGTGAAGTCACAAAAAGTGTACCAAAAGACTCATGGTACATGGCTAGGATTGATTCTGATGGAGTTTTCAGATTTTATTATCACCCCAAAACTGAGACCAATGTTGCTGACAGCTGCACTTCAGGTTGGAAAGTGCTGCAACAATATCCTGAAGATATTTGCCTTGTCTTCATGAAGGACATGGGAAGTGTTATATGTGGTTTTAACAGTTACTGTGTTACCATTAATGGTAAGCCTAATTGTGAATGCCCTGAGCATTATTCTCGTTTTGTTTATAATAATCTCACAAGTTGTAGACCGGATTTTCCACTACCCAGCTGCTACATAGAGGGGTGGGATCAGAATAAAGATCTAGTAGATTTCAAAGAGTATCCAAATGTGAACTGGCCTCTCAATGATTATGATCAGCTGATGGGTGAGGCAATGGACAAGGATATGTGTAAACAAAAATGCCTTGAAGATTGCTTCTGCTCTGTAGCCATAAATAATGATGCTGGACAGTGTTGGAAGAAAAGATATCCTTTGAGTAATGGAAGGAAACACCCTAACATCAATGGAACAATAGCTCTTGTCAAGGTACCTAAAACAAATTTGACCAAGCCTGACAAAGAACGGTCAAAACTGGTGCTTGTCATATCAATACTTCTTGGGAGCTCTGTGCTCCTCAATTTCATTCTATTTGTTGCTTTTTTTGTAGCCTTTTTCTTGTTCTACCACAGGAAGCTTTTGAATCCAGCTGCAATAACAACAACGACAAGGTGTTTTACATACAAGGAGCTTGAAGAAGCAACTTCAGGCTTCAAACAAATATTGGGTAGAGGTGCTTTTGGGAAGGTATATAAAGGGGTATTAACATCAGATACCAGCAGGTTTGTTGCTGTCAAGAAGCTTGATAAGGTTTTGCAAGAAGGTGAAAAGGAATTCAAAACAGAAGTGAGTGTGATTGGCCAAACCCACCACAGGAATTTGGTTCGTTTACTTGGTTACTGTGATGAAGGGGAGTATCGCCTTTTGGTCTATGAGTATATGAGTAATGGCTCACTAGCAAGTTTTCTCTTTGGGATTTCAAGGCCTCATTGGAATCAAAGAGTGCAAATTGCTTTAGGAATTGCAAGAGGTCTCACATATTTGCATGAAGAGTGCAGCACTCAGATCATTCATTGTGACATAAAGCCTCAGAACATACTCCTTGATGAGTTATTCACTCCAAGAATTTCTGATTTTGGATTAGCAAAGCGATTGTTGGCTGAGCAAACTAGAGCTGCTAAGACAGGTTTGAGAGGGACAATTGGTTACTTTGCACCTGAATGGTTTAGGAAAGCTTCAATCACAACTAAAGTGGATGTTTACAGTTTTGGAATTCTGCTGCTAGAGATCATATGCTGCAAATCAAGTGTTGCCTTTGCAATGGCAAATGAAGAAGAAGCACTCCTAGATTGGGCATATCATTGTTATAGCCAAGGAAAAGTAGCTAAATTGGTAGAAAATGATGAGGAGGCAAAGAATGACATAAAGAGGGTAGAAAAACATGTGATGGTAGCAATTTGGTGCATTCAAGAGGATCCTTCACTAAGACCCTCCATGAAGAAGGTCACCCAAATGCTTGAGGAAGTTACTGCAGTTTCTGTGCCTCCTCGCCCTTCCATGTTCAGTGTACAAGTTGAAACTTCATTTACTTCATAA 2409 0.4006 MASLTLVHSCSLLLLILPLLPSVFSSNCDVQLNSSLPTNSQSSWNSPSGEFALGFKSVIFTDTQTMSVLSIWFAKDPNHTIVWYAKAEKSPAFPAGSTVNLTSKGIVVYDPKGNDMWHRPENNAGDAIVSCASMLDNGSFVLLDKDGKQLWESFDEPTDTILPGQNLAKPKIFRARHSDTSFYDGNFMLAWQNDSNLVLYYSPPDSKTQEPYWATGTSKTESELIFDESGRMYIQNKTGVAISEVTKSVPKDSWYMARIDSDGVFRFYYHPKTETNVADSCTSGWKVLQQYPEDICLVFMKDMGSVICGFNSYCVTINGKPNCECPEHYSRFVYNNLTSCRPDFPLPSCYIEGWDQNKDLVDFKEYPNVNWPLNDYDQLMGEAMDKDMCKQKCLEDCFCSVAINNDAGQCWKKRYPLSNGRKHPNINGTIALVKVPKTNLTKPDKERSKLVLVISILLGSSVLLNFILFVAFFVAFFLFYHRKLLNPAAITTTTRCFTYKELEEATSGFKQILGRGAFGKVYKGVLTSDTSRFVAVKKLDKVLQEGEKEFKTEVSVIGQTHHRNLVRLLGYCDEGEYRLLVYEYMSNGSLASFLFGISRPHWNQRVQIALGIARGLTYLHEECSTQIIHCDIKPQNILLDELFTPRISDFGLAKRLLAEQTRAAKTGLRGTIGYFAPEWFRKASITTKVDVYSFGILLLEIICCKSSVAFAMANEEEALLDWAYHCYSQGKVAKLVENDEEAKNDIKRVEKHVMVAIWCIQEDPSLRPSMKKVTQMLEEVTAVSVPPRPSMFSVQVETSFTS. 803
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09984 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 217 IPR036426 -
Seca4g09984 802 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 785 - -
Seca4g09984 802 FunFam S-receptor-like serine/threonine-protein kinase 481 584 - -
Seca4g09984 802 ProSitePatterns Protein kinases ATP-binding region signature. 513 538 IPR017441 GO:0005524
Seca4g09984 802 Pfam D-mannose binding lectin 80 171 IPR001480 -
Seca4g09984 802 Gene3D - 157 282 IPR036426 -
Seca4g09984 802 SUPERFAMILY alpha-D-mannose-specific plant lectins 177 269 IPR036426 -
Seca4g09984 802 FunFam Serine/threonine-protein kinase 158 299 - -
Seca4g09984 802 CDD PAN_AP_plant 355 436 - -
Seca4g09984 802 SMART serkin_6 507 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09984 802 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 35 788 - -
Seca4g09984 802 ProSiteProfiles Protein kinase domain profile. 507 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09984 802 Gene3D - 24 155 IPR036426 -
Seca4g09984 802 CDD STKc_IRAK 513 779 - -
Seca4g09984 802 SMART blect_4 35 157 IPR001480 -
Seca4g09984 802 Coils Coil 732 752 - -
Seca4g09984 802 Gene3D Phosphorylase Kinase; domain 1 482 584 - -
Seca4g09984 802 SUPERFAMILY Protein kinase-like (PK-like) 487 778 IPR011009 -
Seca4g09984 802 PIRSF SRK 1 802 IPR024171 GO:0004674
Seca4g09984 802 Gene3D Transferase(Phosphotransferase) domain 1 585 785 - -
Seca4g09984 802 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Seca4g09984 802 Pfam Protein kinase domain 510 775 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09984 802 ProSiteProfiles Bulb-type lectin domain profile. 29 155 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09984 Seca-Chr4 232795627 232798035 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09984 497 778 Receptor kinase-like Gene Family AT1G60800 45.862 2.52e-70 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Seca4g09984 Pkinase 1.9e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09984 - - gmx:100796323 1262.67