Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09980 ATGGGGATAGACTTAGGGCACCCTTCTCGAGAACAAAACAGTTTCAGCGACATAGATAATGTCGAGTTCAATTCAAAGGAGGAAGCTTTCTCGTATTACAAAGAATATGCCAAATCAATGGGATTCTCTGCCATCATTAAAGCTAGTCGTCGATCTCGAATCTCCGGAAACTTCATTGATGCCAAATTCGCATGCACCAGATACGGAAACAAGCCAAAGCCACAATCTTTTTCAACCCCTTCAAGCAATGACATGGTAAAAAAGAAACGGGGTAGAGTGAATTCGTCTTGGGCCAAAACTGATTGCAAGGCCTGCATGCATGTCAAGAGAAGGCAAGATGGTAGGTGGATTATATCCAGTTTCATCAAAGACCATAACCATGAAATTTTCCCTAACCATAGAAATTTAGAGTTAGGAAATTATAATAATGATGATGATCGTGATGATAATTCTGAGGCAACAACCAAAAAAATGTCTGTCACAATGGCTAGGAAAAGAAAATCTGGTGAGTGTAGCAAAGTTGAGAATAAAAATAAAGGTGGTGCTGGATATCAGCGTTTGGGTTTTCATGAAGGAGACCTTGGAGCTTTGCTTGGCCATTTTATGTGTATGCAAGATGAGAATCCTAACTTCTTTTATGCTGTTGATTTTAATGAGGGGCAGCAATTGAGGGGTGTTTTCTGGGTTGATGCCAAAAGCAGGGTTGATTATAGGCATTTTAGTGATGTGGTTCTTTTGGACACCACACATGTGAAGAATGATTATAAGCTTCCATTTGTTCCTTTTATTGGTGTGAACCACCACTTTCAGTTCCTGTTGTTAGGGTTGGCTTTTGTGTCTGATGAGTCTAAATCAACATATGTATGGCTGATGCAGGCCTGGCTCAGGGCAATGGGTGGACAAGCTCCGAAAGTGATGCTTACAGACAGAGATGTGGCTTTGAAAGAAGCTGTTGCTGAAGTGCTTCCTGACTCTTGTCATTGTTTTTGTTTGTGGCATGTGCTGAGTAAGGTTCCTGAGAAACTAAGTCATGTAACACTGCAGCATGTGAACTTTATGGCCAAATTTAACAAATGTGTTCTGAGGTCCTGGACAAGGGAACAGTTTGAGAAAAGATGGTGGAAAATGGTTGAGAAATTCAATTTAGGTGATGATGATTGGTTATGCTCGATTTATGAGGACTGTGAACGATGGATACCAGCATATATGAAAGACAAATCTTTAGCAGGGATGTCTACTATGCAAAGATCAGATGCTATAAACTGTTTGTTGGACAGGTATATACAGAGGAAAACTTCATTGAAAGAGTTTTTGGAGCAGTACAAAGTGATATTGAGAGATAAATGTGAAGAGGAAGCAAAAGCAGATTTTGAAACATTGCATAAACAACCCGCATTAAAATCTCCATCACCTTTTGGGAAACAGATGGTAAAATTATACACACATGCAATATTTAAGAAATTCCAGAGTGAGGTTCTGGGAGCTGTTGCCTGTCATCCAAGAAAAGAAAGTGAAGATGGGCCAACAAAAGTGTTTAGGGTTCAAGATTTTGAAGACAATCAAGATTTTATTGTCATGTGGAATGAATCAACCTCTGAAACATCATGTTCCTGCTATTCATTTGAATTCAATGGCTTTCTTTGTAGGCATGTAATGATTATGCTACAAATTTGTGGTGTACATAACATCCCATCTCGGTATATATTGAAACGTTGGACAAAAGATGCCAAGAGACAAACAGAAAAAGATCTGTCAGATGTGGTTGACTCTAGGGCTAAGCGCTATAATAGTCTATGTCAACGAGCCTTTGATCTGGGTGATGAAGGGTCTTTATCACAAGAGAGTTACATTGTTGCTGTAAATGCATTGGAAGAAGCTTTGAGAAAGTGTGAAAGCCTGAAGGATTCAATTCAGAGTAACATAGAACCAAACCCGTCAAATTTTGGTTCTCAAGAGGTGAATACTAGTAACAATGCTGGTCATACAAACAAAAGGAATGGTACTTTTAAGAAAAGACAGGTACACCCAAAACCAAAGACCATTTCTATAGGAGTCAATTCCGGCTGGCAGCAAATGGGAAACCCCAATACACAAGCAGCTGGCCTTGATTGTTCGTATGAATCACAGCAGAGCATTCAAGAGATGGTATGGTGTGGGTTTTGCCATTTTCCAAGTCACTTGAGTCTTATGAATCTTGAAATTTGGGACCTTTTTGCAAACTCTGTTACAGGATCAGCTGAGCTCAAGAGCTCAGAACCTGGAGGGGTATTTTGTTTCTCAACAAATTGA 2289 0.3962 MGIDLGHPSREQNSFSDIDNVEFNSKEEAFSYYKEYAKSMGFSAIIKASRRSRISGNFIDAKFACTRYGNKPKPQSFSTPSSNDMVKKKRGRVNSSWAKTDCKACMHVKRRQDGRWIISSFIKDHNHEIFPNHRNLELGNYNNDDDRDDNSEATTKKMSVTMARKRKSGECSKVENKNKGGAGYQRLGFHEGDLGALLGHFMCMQDENPNFFYAVDFNEGQQLRGVFWVDAKSRVDYRHFSDVVLLDTTHVKNDYKLPFVPFIGVNHHFQFLLLGLAFVSDESKSTYVWLMQAWLRAMGGQAPKVMLTDRDVALKEAVAEVLPDSCHCFCLWHVLSKVPEKLSHVTLQHVNFMAKFNKCVLRSWTREQFEKRWWKMVEKFNLGDDDWLCSIYEDCERWIPAYMKDKSLAGMSTMQRSDAINCLLDRYIQRKTSLKEFLEQYKVILRDKCEEEAKADFETLHKQPALKSPSPFGKQMVKLYTHAIFKKFQSEVLGAVACHPRKESEDGPTKVFRVQDFEDNQDFIVMWNESTSETSCSCYSFEFNGFLCRHVMIMLQICGVHNIPSRYILKRWTKDAKRQTEKDLSDVVDSRAKRYNSLCQRAFDLGDEGSLSQESYIVAVNALEEALRKCESLKDSIQSNIEPNPSNFGSQEVNTSNNAGHTNKRNGTFKKRQVHPKPKTISIGVNSGWQQMGNPNTQAAGLDCSYESQQSIQEMVWCGFCHFPSHLSLMNLEIWDLFANSVTGSAELKSSEPGGVFCFSTN. 763
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09980 762 Coils Coil 620 640 - -
Seca4g09980 762 SMART 26again6 534 561 IPR006564 GO:0008270
Seca4g09980 762 MobiDBLite consensus disorder prediction 71 92 - -
Seca4g09980 762 MobiDBLite consensus disorder prediction 641 664 - -
Seca4g09980 762 Pfam FAR1 DNA-binding domain 31 131 IPR004330 -
Seca4g09980 762 Pfam MULE transposase domain 243 336 IPR018289 -
Seca4g09980 762 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 15 631 IPR031052 GO:0006355
Seca4g09980 762 ProSiteProfiles Zinc finger SWIM-type profile. 523 559 IPR007527 GO:0008270
Seca4g09980 762 MobiDBLite consensus disorder prediction 641 676 - -
Seca4g09980 762 Pfam SWIM zinc finger 525 552 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09980 Seca-Chr4 232770905 232774989 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g09980 FAR1 2.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09980 - - pcin:129315780 979.548