Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09972 ATGGAGCTTGATTTGAATGAGGAGCCTTTGGATAGAACTCATACTTCAGTATTTGAATTTGATTCTTTATTGAATGAACTAGAATCTGCTGCCCAGGGACATATACAGGACCGTATTAGACACCTTGAAGCAGTAACTTCCAGAGCTAGGCAGCGTGAGAGGTGGCCACCGGTTCACTCTCCGGTTCAGATAACCAACCTTACCGGAGAAGCCGCGGCAACTGTTGCCCAAGGTGAAGGAAGGCAGCACCAACAGGTTGAGGAAGGAGTACTTGAAAGTGGGAAAGGGGGCAAAAAGGAAGGTGGTGCCCATTTAATAGCTAAAGCTTTGGGGTTGGAAGAAACAGATGCCAGTAAGGCAGGGGGAAGAACTGGAAAGTTTTTTGATTGTAATGTATGTTTGGACAAGGCAAGAGATCCTGTTTTGACATGCTGTGGTCACTTGTTTTGTTGGCCATGCTTCTATCAGTTGCCATATGCTTATTCAGATGCAAAGGAATGCCCTGTTTGTCAAGGAGAGGTAACTGAAACAGGCATTACTCCAATTTATGGGAATTCAAGGGCAAGTGCTGATTGTCAGATGGATTTGAAAAAAGCAGGTTTGAGAGTTGCTCCTCGACCTCAAGCACCTAGAATTGAGAGTATCAGGCAGAAGCTAATAAGCCAACAAACATCTTCTTCTTTGGTCCAAAACATTCAGCGGTTTAGTAACCTTATTGGTGGACTAGGACAGCCAGTTCAGTCAGAAAGCCCCAATATTGCAACTGATGGAAATGATAGTTTTCTCATTGAATCTTATCCGCAGACAGACAATAATCAACATACTGATTCTCGTCCAATTTCAAGGCTGTTAGAGCAAGGAGCTGCTTCATTTTCATCCCTTTCATCAGCCTTCAATTCTGCAATGGATTCTGCAGAAAGATTTGTTGAGGACCTTGAATCATATGTCCATGGCCAACACATAGGAGGAAGCAGGCGGTCAAATCGCCGTGCTGTTAATAGAAATTCAACTTTTAATGTTGCCGGTATTAACCAGTCAGAGAGTCTTACCCAAGATTTTGCTGCAACTAATTCTGCATCTGCAGCTTTTGTGTCTCCTTTAAGTAGGAATGTTGACACAGTGACTGTTCTAGGCTCAGAAATTCAGACAACAGATAGTAATGTACAGATTAATCCATTAAACCCTTCTTCATCTTACATTAGAAGAAGTACTGGTGTTTCAAGACAAGTTTCAAATCGGCGCAGAAGAAGAAGATAG 1257 0.4272 MELDLNEEPLDRTHTSVFEFDSLLNELESAAQGHIQDRIRHLEAVTSRARQRERWPPVHSPVQITNLTGEAAATVAQGEGRQHQQVEEGVLESGKGGKKEGGAHLIAKALGLEETDASKAGGRTGKFFDCNVCLDKARDPVLTCCGHLFCWPCFYQLPYAYSDAKECPVCQGEVTETGITPIYGNSRASADCQMDLKKAGLRVAPRPQAPRIESIRQKLISQQTSSSLVQNIQRFSNLIGGLGQPVQSESPNIATDGNDSFLIESYPQTDNNQHTDSRPISRLLEQGAASFSSLSSAFNSAMDSAERFVEDLESYVHGQHIGGSRRSNRRAVNRNSTFNVAGINQSESLTQDFAATNSASAAFVSPLSRNVDTVTVLGSEIQTTDSNVQINPLNPSSSYIRRSTGVSRQVSNRRRRRR. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09972 418 MobiDBLite consensus disorder prediction 387 407 - -
Seca4g09972 418 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 113 184 IPR013083 -
Seca4g09972 418 ProSiteProfiles Zinc finger RING-type profile. 130 171 IPR001841 -
Seca4g09972 418 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 101 330 IPR045103 GO:0005783|GO:0006511|GO:0061630
Seca4g09972 418 MobiDBLite consensus disorder prediction 387 418 - -
Seca4g09972 418 Pfam Zinc finger, C3HC4 type (RING finger) 130 176 - -
Seca4g09972 418 SMART ring_2 130 170 IPR001841 -
Seca4g09972 418 SUPERFAMILY RING/U-box 126 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09972 Seca-Chr4 232715405 232717562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09972 62 246 C3H Transcription Factor Family AT3G58030 39.037 1.56e-36 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09972 - - cam:101488454 449.899