Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09971 ATGGATCTCTGCATCTTCAGATCAGGTGGTGGTTGTGATGATGATCATAACAGTACTGCTACTGGCACCACCAGAAATAAGAAGCTTAGGCTCTCTAAGGAACAATCAGCTTTCCTTGAACACAGCTTCAAACAGAACACTACTCTTAACACAAAGATTGCTCTTGCCAAACAACTCCATCTTCACCCTCGCCAAGTGGAAGTGTGGTTTCAAAACAGAAGAGCAAGGCACGGAATTAGCAGAACAAAGTTGAAGCAGACAGAGGTGGAGTGTGAGTACTTGAAGAGGTGCTGTGAAACGCTTAGAGAAGAGAATAGAAGGCTCGAGAAGGAGATTCAAGAATTGAGAGCTTTGAAGACTTCAAACCCATTGTATATGCAGCAGTTACCAGCAACTACCCTGTCCATGTGCCCATCCTGTGTCGCCACCAATTCCATGATCTCTTCTACTACCACTACTGCTGATGAATTATCAACTAATTATAATTCCCGAGCCATTGTTAGGTTCCAGGTTTAA 516 0.436 MDLCIFRSGGGCDDDHNSTATGTTRNKKLRLSKEQSAFLEHSFKQNTTLNTKIALAKQLHLHPRQVEVWFQNRRARHGISRTKLKQTEVECEYLKRCCETLREENRRLEKEIQELRALKTSNPLYMQQLPATTLSMCPSCVATNSMISSTTTTADELSTNYNSRAIVRFQV. 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09971 171 ProSiteProfiles 'Homeobox' domain profile. 22 80 IPR001356 GO:0003677
Seca4g09971 171 Gene3D - 10 88 - -
Seca4g09971 171 Pfam Homeobox associated leucine zipper 85 119 IPR003106 GO:0006355|GO:0043565
Seca4g09971 171 CDD homeodomain 25 81 IPR001356 GO:0003677
Seca4g09971 171 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 14 154 - -
Seca4g09971 171 SMART HOX_1 24 84 IPR001356 GO:0003677
Seca4g09971 171 SMART halz 85 128 IPR003106 GO:0006355|GO:0043565
Seca4g09971 171 Pfam Homeodomain 25 77 IPR001356 GO:0003677
Seca4g09971 171 Coils Coil 84 121 - -
Seca4g09971 171 SUPERFAMILY Homeodomain-like 8 77 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09971 Seca-Chr4 232706221 232706990 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09971 9 140 Homeobox Transcription Factor Family AT3G60390 64.925 1.90e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g09971 Homeodomain 1.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09971 K09338 - gmx:100805312 205.682