Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09956 ATGGCGAATGATAATTTCGTGTATGATGTCTTTCTGAGTTTTAGAGGCGGAACTCGCTACGCTTTCACCGATCATCTCTATCAAGCTTTGCTCCGTCATGGAATCAACGCCTTCAGAGACGATCAGGAACTCAGGAATGGGGATGAAATCAGACCTTCTCTTCTTGATGCAATTGAAAAATCTAGAATCTCAATGGTTGTGCTGTGTCAAGACTATGCATCTTCCACTTGGTGCCTCGACGAACTTGCCAAGATCATCAACTCTTATGAGAACAAAGGAAAATCGGTTTCCGCAATCTTTTACAAAGTAGAACCGTCAGATGTACGGTATCAGAAAAATTCTTATGAAGCCGCCATGGTTAAACACGAAAAGAGATTTGGACAATACTCGGAGAAGGTAAAAGCGTGGAGATCAGCTTTGTCCAGAGTATGTGACCTAAGTGGAGAACATTGCAGGGACGACATGTATGAATCGAAGCTTATCGAGAAGATTGTTAAAGACACCTCAGCTAAACTACCTCCCATGCCTTTACAAATCAAGCATCTAGTTGGACTTGATTCTCGCTTTGAACATGTGAAACCTCTTATTGATATTGATTCTAATAATGTTGTTTGCATGCTGGGGATTTATGGAGTCGGTGGAATAGGCAAAACCACATTTGCAGTGGATCTGTATAACAAGATCAGGCATCAATTTGAAGCTGCAAGTTTTCTTGCTAATGTCAGAGAAAAATCAAATAAAAGCGTCAATGGTCTGGAAGATCTCCAACGGATACTTCTGTCTGAGATGGGTGTGGAGACACAAACCATTATGGGAAGTACATTTAGAGGAAGCTCTGAAATAAAACACAGGCTAGGCCATAAAAGAGTTCTTTTGGTCCTGGATGATGTTGATAATGTAAAACAATTGGAATCACTAGCTGGAGGATGTGATTGGTTTGGTCCTGGTAGCAGGATCATTATAACAACAAGAGATACATATGTTCTACATAAACATGGTGTTGAAATTAAGGAATATAAAATGGAAGAGCTAAACAATCATGAATCCCTTGAACTCTTTTTTTGGTATGCCTTTAATATGAGCAGACCTGTAGAAAGCTTTGCAAATATCTCTACTCGTGCAGTAAGTTATGCAAAGGGTATTCCATTGGCTTTAAGAGTAATTGGCTCCAATTTGAAGGGTAGGAGTGTAGAGGAATGGGAAATTGAATTGCAGAAATATAGGAAGGTTCCAGATGCTGAGATTCAAGGTGTACTGGAAATAAGCTACAATAGTCTATCTGACTTGGACCAGAAAATTTTCTTGGACATTGCCTGTTTCTTCAAGGGGGAAAGATGGGACTATGTTAAAAGGATATTAGATGCCTGTGATTTCTACCCAGATATACGAATATTTCTTAGTAAATGTCTCATAACTGTTGATGAAAATGGCTGCTTGGAAATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTCGAAAGGAATCGCCATCAAACCCTGGTGACCGCAGCAGATTATGGTCTCACAAAGAAGTTCTTGAAGTACTCAAAGAAAACTCAGAAAATACTCCCATTGAAGGAATAATGCTTAATCCCCCAAAACAAGAAAAAATAGATCACTGGACTTATACTGCCTTCGTTAAGATGAAGAACCTCAGAATTTTGATTGTTCGGAATACAATATTTTCATCAGGGCCTAGTTATCTGCCAAATAATTTACGGCTACTCGATTGGAAAGGGTACCCATCGAAGTCTTTTCCTCCGGACTTTTATCCCCGCAGAATTGTTGACTTCAAGTTACCTCATAGTACTCTGATATTTGAAAAGCCATTTCAGATATTTGAGGATTTAACATTCATCAATCTCTCCCAGTGTCAATCCATAACTCAAATTCCTGACCTGTCTGGATCTAAAAACTTAAGAGTATTGACAGTTGATAAATGCCATAAACTGGTAAGGTTTGATAAGTCCATTGGATTTATGCCTAACCTTGTGTATTTAAGTGCTTGGGAGTGCACTGTGCTCAAAAGTTTTGTACCAAAAATGTATTTGCCCTCTCACGAAGTGCTTTCATTTAACTTCTGCAGAAAATTTGAACACTTCCCGCATGTAATGCAAAAGATGACTAAGCCATTAAAGATTCACATGATAAATACTGCCATTAAGGAGTTTCCAGAGTCCATTGGTAACCTTACTGGGCTAGAGTATATTGACATGTCAATTTGCGAAGGGCTCAAAGATCTACAAAGTAGCTTCTTATTGCTTCCAAAACTTGTCATGTTAAAAATTGATGGATGCTCTCGACTTGGAGAATCATTTAAAAGGTTCAAAGAGAGCAATTCAGTGGCTAATGGGTGTCCAAATTTAATGACACTTCATTTTAGCGAGGCTAATCTATCATATGAAGACCTTTTTGTCATTCTAGAAATTTTTCCAAAATTGGAATACTTGAATGTATCTCACAATGAATTTGTAGCTCTCCCAAAATGCATCAAAGGATCTTTGAAAAGTCTTGATGTGAGTTTTTGCCGGAATCTTAAAGAAATTCCAGAACTTCCATTAAGTATTCAGAAAGTAGATGCCAGACACTGTCGATCCTTAACTTCAGAGGCATCAAGCGTGCTGTGGTCTAAGGTTTCAAAAGAGATCCAGAGAATACAAGTTGTGATGCCATTGCCAAAAAGGGAGATTCCAGAATGGTTTGACCATGTTTGCACTCAAGAGATTCCACTTTTCTGGGCTCGCAGGAAGTTTCCCATTGTTGCTTTAGCATTAGTTTTCCAGGAAATAAAGAAGACAGACACATATTCTGAAATTGAAGATGCTATCGAATTATGGACTGGATTCTTGGACTGTCATGTTGTTAGCCTCCACTTGTTTATAGACGGCCAAGAAATATGTGGCAGTGATTACCATTATTTCAATGTCGGGAAAGATCACATGTTATTGTGTGATCTACGAGTTTTGTTCAGTGATGAAGAGTGGCATGGCCTTGATGCAAGTCTTGGAGATGATTGGAAGGCCATTCAAGTTCAATATGATTCAGACATGATTCTGAGTAATTGGGGAGTTTATGTGTACAAGCAGGAAACAAACATGGGTGATATCCAATTCAGGCTTCCCAATCCCAACTCCACACGAGACTACATGCCATCATCACAGTTGGTTCCGAAGGGATCTCCAGAGCAGAAAATGAGACACGTGCTTGAAAGTTTTAATCCAAGAGACATGTTTAGTGAGTATTTGTCTCTAATAGAATCAGAAGAAGGTCCTATCAGGTCTTCAAAAGTATTTTTGAGGTATTGGAGGAACGCTAAGGCTGAAATTAGAGAGGAAGCTTCAGCCTCTGTCTATGGGGCAAGTTTAAAGCAAGAACATGAAGAATCTGTTGAGGATGTGGTAAGGGTCTTAGAGATGATAAAGGAGAATGTACCAAAACATATTGCTGATTCGTACCCTGAAGATATGAAAACTGTAGATGGATTAGTGGAAAGATTATTGAAGGCACGGGTAGAATTAATGAAGGAAAATGGGTTGGACATTGGTATGCCTATTATTCTAGAGTATACTGATGTAGGGAGAGCTACAACTACAAGTCGACGCTTTTGGGGAATCTTGGAGATAAAAGTAGGAGATCCATTTTACAAAGCAGTATTGAGGAGGCTAAACCAACTTTCTTGGGAATTTTGGACCAGCAATGAAGTCTCAAGCTCTGGGTGGTTAGCAAACTTGAGGGTACCCATTGTTCTATTGAAATGCCAGCGCCCAGCTACAGAGGAACCTTCAAGCTCTGGCCATGGGGAGTCCTTGGAGCAAGGACACTACAATCATGAATTGGAAGAGTTAATGATAAGGATAGAGCAAGACGCTATGAGCTTGAATAAATCTTATGGGAAAATGAAGGCGTCTATTGTTCGAACTGATGACCCAATTTCTCCAGAGTATCTATTGGAAACATTAATCTTCAGAAGACTACTAATCTTGGGAAAATTAACAATGTTTGGATCTTTGACTAAGTTCAAGATAACGCCTTATGGGAAGATAAGGGTAGAGGACGATCCTTTGGGCACGCTGAAGACATGTATCTGGGGTGTGGTGCTGGTTCTTATTGTCCTAACCATATGGTTATTTTATTTTGTAGGCTATGTGGGGATTTTTATTTATAGGATACCAATTATAAAACAGTTATTAGTGTGGGGTTGGTGGCTTATCATGCAAATTTTTGTGTCTTGTAAATACTTATACATGAGAATTTACAAGATTATGAGAATAAAGGAAAAGGAATTGTAG 4293 0.3899 MANDNFVYDVFLSFRGGTRYAFTDHLYQALLRHGINAFRDDQELRNGDEIRPSLLDAIEKSRISMVVLCQDYASSTWCLDELAKIINSYENKGKSVSAIFYKVEPSDVRYQKNSYEAAMVKHEKRFGQYSEKVKAWRSALSRVCDLSGEHCRDDMYESKLIEKIVKDTSAKLPPMPLQIKHLVGLDSRFEHVKPLIDIDSNNVVCMLGIYGVGGIGKTTFAVDLYNKIRHQFEAASFLANVREKSNKSVNGLEDLQRILLSEMGVETQTIMGSTFRGSSEIKHRLGHKRVLLVLDDVDNVKQLESLAGGCDWFGPGSRIIITTRDTYVLHKHGVEIKEYKMEELNNHESLELFFWYAFNMSRPVESFANISTRAVSYAKGIPLALRVIGSNLKGRSVEEWEIELQKYRKVPDAEIQGVLEISYNSLSDLDQKIFLDIACFFKGERWDYVKRILDACDFYPDIRIFLSKCLITVDENGCLEMHDLIQDMGREIVRKESPSNPGDRSRLWSHKEVLEVLKENSENTPIEGIMLNPPKQEKIDHWTYTAFVKMKNLRILIVRNTIFSSGPSYLPNNLRLLDWKGYPSKSFPPDFYPRRIVDFKLPHSTLIFEKPFQIFEDLTFINLSQCQSITQIPDLSGSKNLRVLTVDKCHKLVRFDKSIGFMPNLVYLSAWECTVLKSFVPKMYLPSHEVLSFNFCRKFEHFPHVMQKMTKPLKIHMINTAIKEFPESIGNLTGLEYIDMSICEGLKDLQSSFLLLPKLVMLKIDGCSRLGESFKRFKESNSVANGCPNLMTLHFSEANLSYEDLFVILEIFPKLEYLNVSHNEFVALPKCIKGSLKSLDVSFCRNLKEIPELPLSIQKVDARHCRSLTSEASSVLWSKVSKEIQRIQVVMPLPKREIPEWFDHVCTQEIPLFWARRKFPIVALALVFQEIKKTDTYSEIEDAIELWTGFLDCHVVSLHLFIDGQEICGSDYHYFNVGKDHMLLCDLRVLFSDEEWHGLDASLGDDWKAIQVQYDSDMILSNWGVYVYKQETNMGDIQFRLPNPNSTRDYMPSSQLVPKGSPEQKMRHVLESFNPRDMFSEYLSLIESEEGPIRSSKVFLRYWRNAKAEIREEASASVYGASLKQEHEESVEDVVRVLEMIKENVPKHIADSYPEDMKTVDGLVERLLKARVELMKENGLDIGMPIILEYTDVGRATTTSRRFWGILEIKVGDPFYKAVLRRLNQLSWEFWTSNEVSSSGWLANLRVPIVLLKCQRPATEEPSSSGHGESLEQGHYNHELEELMIRIEQDAMSLNKSYGKMKASIVRTDDPISPEYLLETLIFRRLLILGKLTMFGSLTKFKITPYGKIRVEDDPLGTLKTCIWGVVLVLIVLTIWLFYFVGYVGIFIYRIPIIKQLLVWGWWLIMQIFVSCKYLYMRIYKIMRIKEKEL. 1431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09956 1430 PRINTS Disease resistance protein signature 378 392 - -
Seca4g09956 1430 PRINTS Disease resistance protein signature 206 221 - -
Seca4g09956 1430 PRINTS Disease resistance protein signature 284 298 - -
Seca4g09956 1430 PRINTS Disease resistance protein signature 730 746 - -
Seca4g09956 1430 FunFam Disease resistance protein (TIR-NBS-LRR class) 4 173 - -
Seca4g09956 1430 SMART till_3 7 146 IPR000157 GO:0007165
Seca4g09956 1430 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 437 IPR027417 -
Seca4g09956 1430 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 148 IPR035897 -
Seca4g09956 1430 Gene3D - 7 171 IPR035897 -
Seca4g09956 1430 Pfam TIR domain 8 179 IPR000157 GO:0007165
Seca4g09956 1430 Coils Coil 1277 1297 - -
Seca4g09956 1430 Gene3D Ribonuclease Inhibitor 538 715 IPR032675 -
Seca4g09956 1430 Gene3D Ribonuclease Inhibitor 716 884 IPR032675 -
Seca4g09956 1430 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 8 750 IPR044974 GO:0006952
Seca4g09956 1430 SUPERFAMILY L domain-like 497 902 - -
Seca4g09956 1430 Pfam NB-ARC domain 205 407 IPR002182 GO:0043531
Seca4g09956 1430 Gene3D - 172 340 IPR027417 -
Seca4g09956 1430 ProSiteProfiles TIR domain profile. 6 172 IPR000157 GO:0007165
Seca4g09956 1430 Gene3D - 343 427 IPR042197 -
Seca4g09956 1430 Coils Coil 1124 1144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09956 Seca-Chr4 232556499 232563707 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09956 8 778 WRKY Transcription Factor Family AT4G12020 30.905 1.37e-84 304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09956 - - cam:101493067 1794.25