Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09950 ATGGCAAATCATGATGCATCATCATCCTCAGATTTCATGTATGATGTTTTTCTGATAAGCTTTTCAAAAGGAAACAGCTACGCATTCACTGGTCATCTCTATCATGCTTTGCAAAATAATGGAATCAACACCGTCAGATGCAGTGACAATGAAACTGATAATATTGTTGAGACAATCGAGAAATCCAGAATTTCAATGGTTGTGCTATGCGAAAACTACGCACGCTCCACTCGGTGCCTTGACATACTGGTCAAGATCATTGAGTGTTACGATGCCAAAGGGAAACAAGTTTCGGTAATTTTTCACAATATTGTTGAATGGAATTCTTATGCAGCAGCCATGATTGAATATGAAGAGAACTTGGGGGAACACTCGGATCAGGTGAAAGCATGGAGGTCAGCTTTGTCTAGAATTGGCCATGGTCACCTTGCCGGAGAATATTGCACGGATAAGTATGAATCTGGCTTTATCAACAAGGTTATTAGGGACACCTTTGCTAAATTACCTCCCCCTCCTGTGCCTTTAGAAATTAAGCATCCAGTTGGACTTGATTCTCACTTTGAAGAGGTGAAATCACTTTTAGATATTGAATCTAATGATGATGCCGTTTGCATGTTGGGAATTTATGGAGACGCTGGAATAGGCAAAACCACATTTGCCGCGTATTTGTATAACAAGATCAGGGATCGATTTGAAGCTGGAAGTTTTCTTGCTAATGTCAAAGAAAAATCAAACAATAACAGCATTGATGGTTTAGAATATCTCCAAAGGACACTTCTATATGAGACTGTTAAGGAGGTGATGGGCACTACATTTGAAGAACGATCTCGAATAATAAAACATAAGCTTCTTAGCCATAAAAAAGTTCTTTTGATTTTGGATGATGTTGATACGATAGAACAATTGGAAGCACTAGCTGGAGAATGTGACTGGTTTGGTTCTGGTAGCTTGATCATTATAACAACAAGGGATGAAACTGTGCTAGATAAGCATGATGTTGCAATTAAGAAATATAAAATGGAGGAGCTAAGTTCTGGTGACTCGCTACAACTCTTTTGTTGGTATGTCTTTAATACGAGCGAACCTGCAGAAAACTATGCAGATATTTCTACGAAAGTAGTGAGTTATGCAAAGGGTTTTCCACGGGCTTTAAAAGTATTAGGCTCCAATTTAAAGGGTCTAAGTGTAGAGGAATGGGAAATGGAATTGGAGAAATATAGGAAGGTTCCAGATACGTTTTATTTTTTGGTAGATTCTTTTTGA 1263 0.3832 MANHDASSSSDFMYDVFLISFSKGNSYAFTGHLYHALQNNGINTVRCSDNETDNIVETIEKSRISMVVLCENYARSTRCLDILVKIIECYDAKGKQVSVIFHNIVEWNSYAAAMIEYEENLGEHSDQVKAWRSALSRIGHGHLAGEYCTDKYESGFINKVIRDTFAKLPPPPVPLEIKHPVGLDSHFEEVKSLLDIESNDDAVCMLGIYGDAGIGKTTFAAYLYNKIRDRFEAGSFLANVKEKSNNNSIDGLEYLQRTLLYETVKEVMGTTFEERSRIIKHKLLSHKKVLLILDDVDTIEQLEALAGECDWFGSGSLIIITTRDETVLDKHDVAIKKYKMEELSSGDSLQLFCWYVFNTSEPAENYADISTKVVSYAKGFPRALKVLGSNLKGLSVEEWEMELEKYRKVPDTFYFLVDSF. 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09950 420 Pfam NB-ARC domain 185 402 IPR002182 GO:0043531
Seca4g09950 420 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 137 IPR035897 -
Seca4g09950 420 Gene3D - 342 414 IPR042197 -
Seca4g09950 420 Gene3D - 7 169 IPR035897 -
Seca4g09950 420 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 409 IPR044974 GO:0006952
Seca4g09950 420 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 169 410 IPR027417 -
Seca4g09950 420 SMART till_3 13 167 IPR000157 GO:0007165
Seca4g09950 420 PRINTS Disease resistance protein signature 377 391 - -
Seca4g09950 420 PRINTS Disease resistance protein signature 283 297 - -
Seca4g09950 420 PRINTS Disease resistance protein signature 205 220 - -
Seca4g09950 420 Gene3D - 170 339 IPR027417 -
Seca4g09950 420 ProSiteProfiles TIR domain profile. 12 168 IPR000157 GO:0007165
Seca4g09950 420 Pfam TIR domain 14 167 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09950 Seca-Chr4 232511210 232513020 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09950 7 389 WRKY Transcription Factor Family AT4G12020 30.250 6.72e-27 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09950 - - vum:124827482 429.869