LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g09949	ATGGCAAATCTAAATCGCGATGCAACATCCTCGGATGATTTCTTCTATGATGTTTTTCTGAGTTTTAGAGGCGAAGGTGGAACCCGTTACGGATTTACGGATCATCTCTACAATGCTCTGCGCCAGAAAGGAATCTTCACTTTCAGAGACAATGAGGAATTGAGGATAGGGGAAGAAATCAGACCTGCTCTTTTTGAGGCAATAGAAAATTCCAGAATCTCCATGGTTGTGTTGTGTCAAAACTACGCATCCTCCACTTGGTGCCTTGATGAACTTACCCACATCATCAACTGCTATTATAGCAAAGGCAAACAGGTTTTAGTAATTTTTTACAAAGTTAAGCCTTCAGATCTGGAAAATTCTTATGCTGGTACTATGAAGGAACTTGAAAGTAGATTCGGACAAGACTCCAATAAGGTCAAAAAGTGGAGGAAAACTTTGTCTAGAGTGCGTGACCTTCCTCGAGAACATTGCAAGGATAACATGGATGAAGCTGAGCTTATAAAGAAGATTGTTAAAGACACCTCTGCTAAATTACCTCCTATCCCTTTGCCAATCAAACATGTAGTTGGACTTGATTCTCGCTTTGATCAAGTGAAACCACTTATAGATATTGAGTCTCATGATGCAGTCTACATGCTGGAAATTTATGGGGCTGGTGGAATAGGCAAAACCACATTTGCCTTGGATATCTACAACAAGACCAAGAATCAATTTGAAGTTGCAAGTTTTCTTGCTAATGTCAGAGAAAAATCAAACAAAAGCTCTAAAGGCTTGGAGGATCTCCAAAAGACTCTTCTATCTGAGATGGGTGAGGACATAGAAACCATGATAGGCAGTACTTTTAAGGGAGCCTTTGAGATCAAACGGAGGCTTGCCCATAAAAGGGTTCTCTTGGTTTTGGATGATGTTGATTCGATAGAACAATTGAAAGCACTAGCTGGTGGACATGATTGGTTTGGTTCTGGTAGTAGGATCATTATAACAACAAGGGACATAACAATGCTAGATAAGCATGTGATGGATGGTGTTATCTTCAAAAAGTATAAAATGGAGGAGCTGAATGATTCAGACTCTCTTGAACTCTTTTGTTGGCATGCCTTTAGTATGATTCAACCTGAAGAAAAATTTGCAGATGTTTCTAGTCGTGTAGTAAGTTATGCAAAAGGTGTTCCATTGGCTTTAAAAGTAATAGGCTCCAATTTGAAGGGTGGGAGCCTAGAGGATTGGGAAATGGAATTGGAAAAATATAGGAATATTCCAAATGCTGAGATTCAAGGAATACTTGAAATAAGCTACCATAGCTTGTCTGAGTTGGACCAAAAAACTTTCTTGGACATTGCTTGCTTTTTCAATGGAGAGAGATGGGAATATGTTAAAAGGATATTAAAGGCTTGTGATTTCTTCCCAATTATTCGAGTATATGTTAGTAAATGTCTCATAACTATTGATGACAATGGAGGCTTGGATATGCATGATCTAATACAAGACATGGGTAGAGAGATTGTTAGAAAGGAGTCCCCAGGAAGCCCTGGTGATCGTAGCAGATTATGGTCTCATAAAGAAGTTCTTCAAGTACTTAAAGAAAACTCAGGAAGTAGTACAGTTGAAGGAATACTGCTTGATCCCCCTAGTCATGAAGAAGTATATCGTTGGAATGACACTGCCTTTCAGAAGATGCTGAATCTTAGAATTCTGATTGTTCGGAATGCAGTATTTTCAACAGGACCTAGTTATCTACCTAATAGTTTAAGGGTACTTGAATGGAAAGGGTATCCATCAAAGTCTTTTCCACAAAATTTCTATCCCTCCAGAATTGTTGATTTCAAGCTACCTCATAGTCCTTTGATATTGGAAGGACCATTTCAGAAATTTGAGGATTTGACATTCATCAATCTCTCCCAGTGTCAATCCATCACTCAAATACCTAATATGTCTCAAGCTATAAATTTAAGGGCATTGACACTTGATAGATGCCATAAAGTGGTAAGGTTTGATAAATCCATTGGATTTATGCCTAACCTTGTGTATGTAAGTGCTTCAGAGTGCAACATGCTCAAAAGTTTTGTGCCTGAAATGTATCTGCCATCTCTGGAGATGCTTTCCTTCAACTTTTGCAAAAGACTTGAACACTTCCCAGAAGTAGTGCAAAAGATGGATAAGCCATTGAAGATTCACATGATAAATACTGCTATTAAGGAGTTTCCAAAGTCCATTGGTAACCTTGTTGGACTTGAGTATATAGACATGTCAATGTGCAGAAGACTCAATGATCTATCAAGTAGCTTCTTCTTGTTGCCAAAACTTGTCACGTTAATAGTTGATGGATGTTCTCAGCTTGGGAAATCATTTGAAAGGTTCAAAGAGACTCATTCAGTAGCAAATGGATGCCCAAATTTGATGACATTGCATACCAGTGAGGCAAATCTATCAGATGAACATCTTCATACTATTCTTGAAAATTTTCCAAAATTGGAAGACTTGAATGTGTCTCACAACAATTTTTTATCTCTCCCAAAATGCATCAAAGGATCTTCCAACTTGAAAAGTCTTGATGTGAGTTATTGCAGGAATCTTAAGGAAATTCCAGAACTGCCGTCAAGTATTCAGAAAGTAGATGCAAGATATTGTCGATCCTTAACTACAAAGGCATCAAGTGTGCTGTGGTCCAAGGTTTGTAAGGATAAGGAAAGAATACAAGTTGTGATGCCAAAAACAGAGATTCCGAATTGGTTTGACTATATTGGCAGTGAAGGTATCCCACTTTTCTGGGCTCGCGGAAAGTTCCCTGTTATTGCTTTAGCATTCGTGTTAGGGGAAGCGAAAGAGAGTAATGAGATACAAAACGACACCTTCATCTCACAATTCTTACCTGGAATGATGTCAGATATGTCCCATATTGTTGGTCTTCATGTGTTTATAAACGGCCAAGAAATGTGTCGCAAAGATTATCATTATTGCAATGTTGGGGAGGATCATGTGTTATTATGTGATCTAAAAACTTTGTTTAATGAACAAGAGTGGCAGGGTCTTGAAGATGCATGTGTTGGAGATGATTGGAAAGCCATTCAGGTTCAATGTGAATCAGACTTGATTCTGAGCCGTTGGGGAATTTACATGTACAAGCAAAAAGCAAACACCAATGATAATGATATCCAATTCAAGCATTCCAATTCCAAAAACATGCCAATGTCATCATCAAGTTTGGTTCCAAAAAGAACTCCTGAAATATCTAAGCAGAGAATGAGACACGTGTCAGAAAATTTTAATCCAAGAGAGATGTTTGGTGACTATTTGCCTCTTTTGGAGTCAGTAGAAACTCCCACCTTTACAAAAGCGTTATTGAGGACGTGGAGGAATGCTAAGGCTGATATTAGAGGGGAAGCTTCAGCCTCTGCCTATGGGGCAAGTTTAATGCAAGAACATGAACAATCTAATTGGGATGTGGTACGCGTTGTGGAGTTGGTGAAGGAAAATGTACCAAAATATATTGCTGACTCATACACAGATGACATACAAAGTGCTCATCGAATTATGGAACAGGTGTTGAGGGCACGTGTAGAATTTATAAGGGAAAAAGGCCATGATAGGTTGAATATCGATATGCCTATTATCCTAGAAGCTCCAAGTCGTCGCTATTGGGGGAAACTAGAGATACAACATGGAGATCCAACCTTTAAAGCGGTGTTGAATCAGACAAACCAACTTTCTTGGAGCTTTTATTCAGAGAATAGAGAAAACTTTCAGTTGCAGTTGCAGGAGAAGAGGATGTACATGGTTTTATTGAAATGCCAAGGTGAAGGTGAAGGTGAAGGTGAAGGGGAAAGTTTGGAGGAGGAAGAATATTATGATCCTGTGTTGGAAGAGTTATTGAGCAGGATAGAGGAGGACGCTATGAGGTTGAATAAATCTTATGGGAAGTTGAAGGCATCTATTGCTCCATGCACAAGTCAAGATTTCATTTCTGATAAATATCTATTAGAGGGTGCATACCTCAGAGCGCAAGAAAATCTGGCCGGAGGAAATTTTCAACTGGGAATGTTGGAAATGGGATTGGTTGGAATGATGGGAGGAATGCCGCGATTAGGAAATATGGTAGTTAATTTTGAAAAGACACCTTATGGGAAGCTGAGGGTGGGGGATGATACTCACAGTACTGATCAAAATCAGAATAAGTTGGGTTGGATTAAGGTTCTTATGAGGTGGACTTTATGTTGCTGTATCCCTGAATGA	4233	0.3898	MANLNRDATSSDDFFYDVFLSFRGEGGTRYGFTDHLYNALRQKGIFTFRDNEELRIGEEIRPALFEAIENSRISMVVLCQNYASSTWCLDELTHIINCYYSKGKQVLVIFYKVKPSDLENSYAGTMKELESRFGQDSNKVKKWRKTLSRVRDLPREHCKDNMDEAELIKKIVKDTSAKLPPIPLPIKHVVGLDSRFDQVKPLIDIESHDAVYMLEIYGAGGIGKTTFALDIYNKTKNQFEVASFLANVREKSNKSSKGLEDLQKTLLSEMGEDIETMIGSTFKGAFEIKRRLAHKRVLLVLDDVDSIEQLKALAGGHDWFGSGSRIIITTRDITMLDKHVMDGVIFKKYKMEELNDSDSLELFCWHAFSMIQPEEKFADVSSRVVSYAKGVPLALKVIGSNLKGGSLEDWEMELEKYRNIPNAEIQGILEISYHSLSELDQKTFLDIACFFNGERWEYVKRILKACDFFPIIRVYVSKCLITIDDNGGLDMHDLIQDMGREIVRKESPGSPGDRSRLWSHKEVLQVLKENSGSSTVEGILLDPPSHEEVYRWNDTAFQKMLNLRILIVRNAVFSTGPSYLPNSLRVLEWKGYPSKSFPQNFYPSRIVDFKLPHSPLILEGPFQKFEDLTFINLSQCQSITQIPNMSQAINLRALTLDRCHKVVRFDKSIGFMPNLVYVSASECNMLKSFVPEMYLPSLEMLSFNFCKRLEHFPEVVQKMDKPLKIHMINTAIKEFPKSIGNLVGLEYIDMSMCRRLNDLSSSFFLLPKLVTLIVDGCSQLGKSFERFKETHSVANGCPNLMTLHTSEANLSDEHLHTILENFPKLEDLNVSHNNFLSLPKCIKGSSNLKSLDVSYCRNLKEIPELPSSIQKVDARYCRSLTTKASSVLWSKVCKDKERIQVVMPKTEIPNWFDYIGSEGIPLFWARGKFPVIALAFVLGEAKESNEIQNDTFISQFLPGMMSDMSHIVGLHVFINGQEMCRKDYHYCNVGEDHVLLCDLKTLFNEQEWQGLEDACVGDDWKAIQVQCESDLILSRWGIYMYKQKANTNDNDIQFKHSNSKNMPMSSSSLVPKRTPEISKQRMRHVSENFNPREMFGDYLPLLESVETPTFTKALLRTWRNAKADIRGEASASAYGASLMQEHEQSNWDVVRVVELVKENVPKYIADSYTDDIQSAHRIMEQVLRARVEFIREKGHDRLNIDMPIILEAPSRRYWGKLEIQHGDPTFKAVLNQTNQLSWSFYSENRENFQLQLQEKRMYMVLLKCQGEGEGEGEGESLEEEEYYDPVLEELLSRIEEDAMRLNKSYGKLKASIAPCTSQDFISDKYLLEGAYLRAQENLAGGNFQLGMLEMGLVGMMGGMPRLGNMVVNFEKTPYGKLRVGDDTHSTDQNQNKLGWIKVLMRWTLCCCIPE.	1411

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g09949	1410	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	16	759	IPR044974	GO:0006952
	Seca4g09949	1410	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	181	447	IPR027417	-
	Seca4g09949	1410	MobiDBLite	consensus disorder prediction	1057	1077	-	-
	Seca4g09949	1410	Pfam	TIR domain	16	179	IPR000157	GO:0007165
	Seca4g09949	1410	PRINTS	Disease resistance protein signature	843	859	-	-
	Seca4g09949	1410	PRINTS	Disease resistance protein signature	291	305	-	-
	Seca4g09949	1410	PRINTS	Disease resistance protein signature	388	402	-	-
	Seca4g09949	1410	PRINTS	Disease resistance protein signature	213	228	-	-
	Seca4g09949	1410	Gene3D	Ribonuclease Inhibitor	549	726	IPR032675	-
	Seca4g09949	1410	Gene3D	Ribonuclease Inhibitor	727	889	IPR032675	-
	Seca4g09949	1410	MobiDBLite	consensus disorder prediction	1057	1074	-	-
	Seca4g09949	1410	SMART	till_3	15	153	IPR000157	GO:0007165
	Seca4g09949	1410	SUPERFAMILY	Toll/Interleukin receptor TIR domain	7	153	IPR035897	-
	Seca4g09949	1410	Gene3D	-	10	178	IPR035897	-
	Seca4g09949	1410	ProSiteProfiles	TIR domain profile.	14	179	IPR000157	GO:0007165
	Seca4g09949	1410	SUPERFAMILY	L domain-like	491	871	-	-
	Seca4g09949	1410	Pfam	NB-ARC domain	211	416	IPR002182	GO:0043531
	Seca4g09949	1410	Gene3D	-	179	342	IPR027417	-
	Seca4g09949	1410	Gene3D	-	353	437	IPR042197	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g09949	Seca-Chr4	232466524	232474373	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g09949	9	790	WRKY Transcription Factor Family	AT4G12020	31.047	3.03e-88	315

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g09949	-		-	tpra:123920924	1843.55