Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09946 ATGGCAAATCATTCTGCAACATCCTCAGATTTCAGCTATGATGTTTTTCTAGGTTATTTTAATGGCGGAGCCAGCAACGCATTTGTTGATCGTCTTTATCAAGCTTTGCTTGAAAAAGGAATCAATACCTTCAGAGATGGTGTAAAAAGACCTGCCTTTGAGGAAATTGAAAAATCCAGATTGTCAATGCTTGTGCTCTGTGAAAAATATGCATCTTCTATAGAGTGCCTTGATGAAATAGTCAAAATCAGTGACTACATTGACAACAAAAGAAAACAGATTACGGTGATTTTTTACAAAGTGGAACCATCAGAGGTACGTAAACAAAAGAATTCTTATGAAGCAGCGATGGACGAACATGAAAAGAGAAATGGACAAGACCCGGAGAAGATAGAAGTATGGAGGAAAGCTTTGACTAGAGTATGCGACATAAGCGGGGTACATTACAAGTACAATAAGGATGAACCTTGGTTGATAGAGAAGATTGTTAAAGACACATTCACTAAAATAGCTCCTGTGCCTTTTCAAATCAACCGTGTAGTTGGACTTGATGCTCATTTTGAACATGTGAAATCAGTCTTAGATATTGAGTCTAAAGATACTGTGCGCATGTTGGGAATTTATGGAGCTGGTGGAATAGGCAAGACCACATTTGCCGCCTACCTATATGACAAGATCAGGCACTATTTCGAAGCTCCAACTTTTCTTCTTCATGACAGAGAAGAAACAAACAGAAGTACTAAAGGCCTAGAAGATCTCCAAATGAAACTTCTATCTCAGATGGGTGAGTCAACAGAAACCAAGGTGGGCAGTATATTTAAAGGAGGCCTTGAGATCAAACACAGGCTTGGCAATAGAAGAGTTCTTCTGGTTTTGGATGATATTGATACCATAGCAAAATTGAAATCACTGGCTGGGGGATGTGATTGGTTTGGTTCTGGTAGCAGGATCATTATAACAACAAGGGATGCAGCTGTGCTAGATAATCATGACATTGAAATTAAGAAATATAAAATGGAGGAGCTAAATGATAGTGACTCTCTTGAACTCTTTTGTTGGAATGCCTTTGATATGAGCAGACCTCTAGAAAAGTTTGAAGATATTTCTCACCGTGCAGTAAGTTATGCAAAAGGTATTCCATTGGCTTTACGAGTAATAGGATCCAATTTGAAGGGTCGAAGAATAGAGGAATGGGAAATTGAATTGGGCAAATATAGGAAGGTTCCACATGCTGATATTCAAAGTGTACTAGAAATAAGCTACTACAGTCTTTCTGAACTAGAGAGGAAGATATTCTTAGACATTGCTTGTTTCTTCAAGGGAGAGAAATGGGTATATGTGGAAAGGATACTGGAGGCTTGTGATTTCTACCCAACTTTTCGAGTATTTGATTCTAAATGTCTAATAACTATTGATGAAAATGGCTGCTTGGAGATGCATGATCTAATAAGAGACATGGGTAGAGAGATTGTTAGGAAGGAGTCGCCATCAAGTCCTGGTAACCGTAGCAGATTATGGTCTCATAAAGATGTACTTCAAGTACTTAAAGAAAACTCAGGAAGCATTAAAATTGAGGGAATAATGCTTCATCCCCCCAGACATGAAGAAATAGATCATTGGAGTAATACTGCCTTCAAGAAGATGAAGAACCTCAGAATTCTTATTGTTCGGAATGCAAAGTTTTCCACAGGACCTAGTTATCTACCAAATAGTTTACGGCTACTTGATTGGACGGGGTTTCCATCACAGTCTTTTCCACCTGAATTTTATCCCGAGAGAATTGTTGACTTCAAGCTATCTCATAGTCCTCTGATATTTGCAGAGCTACTTCAGATATTTAAGGATTTGACATTCATCAATCTCTCCCAATGTCAATCCATAACTCAAATACCTAATCTGTCTGGAGCAAAAAACTTAAGAGTACTTACGCTTCACAGATGCCATAAATTGGAAGGGTTTGACAAATCCATTGGATTATATATGTCTAACCTAGTGTATTTAAGTGCATCAGAGTGCACCATGCTCAAAAGTTTTGTGCCAAAAATGTATTTCCCATCTCTGGAAGTGCTTTCATTTAACTTCTGCACAAGACTTGAACACTTCCCTGAAGTAATGCGAAGGATGGATAAGCAATTAAAGATTCACCTGATAAATACTGCTATAAAGGAGTTTCCAGAGTCCATTGGTAAACTTACTGGGCTTGAGTATGTAGACATGTCAACTTGTGAAGGACTCAGAGATCTATCAAGAAGCTTTTTATTGTTGCCAAAACTTGTCACATTAAAAGCTGATGGATGTTATCAACTTGGAGAATCATTTAAAAGGTTCAAAGAGAGCCATTTAATAGCAAATGGCTGCCCAAATTTAAAGGCACTTTGTTTCAGCAAGGCTAATCTATCATCAGAAGATCTTCACATAATCCTTGAAATATTTCCAAATTTGGAATACTTGAATGTATCACACAATGGACTTATATCCCTTCCAGAATGCATCAAAATATCTTCGCAGTTGAAAAGTCTTGATATAAGTTGTTGCAGGAATCTTTTGGAAATTCCAGAACTTCCGTTAAGTATTCAGAGTATAGATGCAAGACATTGTCAATCCTTAATTCCAAAAGCATTAAACGTGCTATGGTCTAAGGTTTGTGAAGAGACGGAAAGAATACAAGTTGTGATGCCAAAAACGGAAATTCCAAATTGGTTTGACTGTGTTGGCAGTGAAGATACTCCTCTTTTCTGGGCTCGTGGAAAGTTCCCCATTGTTACATTAACCTTTGTGTTCGGTGAGATGAAGATGGACAGGTCGGAATTCTTCCCTGGAGTTGTATCAGCTGAGTCCCACAAGGTTGTTCTCCACTTATTCATAGACAACAAAGAAATATGTCACAAAGATTACCACTGTTGCAGTGTCGGGGAACATCATGTGTTACTGTGTGATCTACGAGTCTTGTTTAATAAAGAAGAGTGGCAGGGTCTTGATGCATGTATTGGAGATGATTGGAAGGCCGTTCAGGTTCAATGTGAGTCACACTTGGCTATGAGTCATTGGGGAGTTTATGTGTACAAGCAGAAAACAAACATGGATAATATCCTATTTAGTTTTCCCAATTCAACAGACCCCATGTCATCATCAAGTTTGGTCCCAAATAAAACTCCACATATACAACATCTTGATCTAGTAGAAGCATTTGGCCAATATTTACATACTTTTAAACTAGAACAATTTGCCTCTGTTGCAAATGAACTATTGAGGTGGTGGAGGAACACTGATGCTGGTGTTAGTGAGGAAGCTTCAGCCCTTGTCTATGGGACAAGTTTAATGCAAGAACACGAAGAGTTTGTGTGGCATGTGTCACGGATTTTAGAGATGTTGATGGAGATTACACCCAAACGTATGGATGATTCAAAATTTCAAAGTGCAGGCCAATTGGTGGTAGAATTATTGATGGCACGGGCACAACCTATGAAGAAAAAAGGCCATGAGACGTTGCACACCAATGTGAGTATGCCTATTATACTAGAGGAATGTGAATGCCACCCTTGTACAGATCTAACAAAAGCTCCAAGGGGTCGCTATTGGGGAAGTGTGGTGCTAGAGCTAGAAGAAGGAGATCCACTTGTGTGGAGAATTTGGAAAAGCAAAGAAGCCATTGGGAAGAGGGTAAGCGTTGTTCTATCGAAATGCCAGCTTGCCTCTACAGAGGGTGCTTCAACCTCTGGCCATGGGGAAATTTTGGAGGAAGAATTCAAGGATCCTGCATTGGAAAAATTGATGAGGGGGATAGAGCAAGATGCAATGAGCTTGAATAAATCTCTTGGGAAGTTGAAGGCGACAATTGTTCCAAGAGATGTCCCAGTTTCTGACAAATACATGATGGAAACAACAATCATCAGAGCACAAGAAAGATTGGGAAGGTTGGGACCTAATTTCAAGAAGACACCTTATGGGAAGTTGAGGGTGGAGCACGATTCTCAGGGTACTATTCATATGCAGCATGAGTTGGGGGTGGAGCATGATGCTCAGAGCAGTACCCAGAATAAGTTGGGTCGGACCAAGATTCTTATTAGGAATATTTGTATGGAGATTGATGATAATGATGTTTATTTTTCCATACCATCAAAAAGCTCAAATGATCCACTAGAGACATCAGAGGAATGGGTTCATGAGTGTGATGAAGAAATCAAACCCGTAGTTGGCAAGATATTTGATACTTTAGATCAAGGAGGGGACTTCTATAAAAGGTATGCACATCTTGCTAGTTTTAGTAGAAAACATGAGATAAACCACTCATTTTACTATGATTATGAGGTTGATGATGAAGGAAAGATGAAATATGTGTTTTGGGCTGATGGTATTTGTCAAAAAAATTACTCTTTATTTGGGGATGTGATTTCTTTTGATACCACATACAATACAAATAAATATTGCATGATATTTGCACCATTCACCGGCATAAATCATCATCGACAAAGCATAACTTTTGGGGCTGCCTTGTTAGCAGATGAAAAGGTTGAGTCATTTGAGTGGTTGTTTAAAACATTTTTGAAAGCAATGGGAGGGCATAAACCTATTATGATCATAACAGATCAGGACCCCGCTATGAAGATTGCAATAGAGAATGTTTTCACAGAAGCACAAAGGCATAAGGAGTTACTTGCAGTTGCAGATAATGATACATTTAATACTATGCCTGAATTGAAGTTACATAAGGATATAGAGAAACATGGCAGAGAAATATACACTCATGAAAATTTCTACATATTTCAAGGTGAATTGTGGCGTGCATGTGTGGATTGTTGGGTTGAAGGATCTAGAGAGGACAATGGGCAGTCATTAATTTCTATAATTGAGCATATTATGGTTAATGGCAACAAAGTTAGCAAACTCAAGGAAGTTGTTTATAATTCTTCCAATCACATTGCACATTGTTCGTGTAAAATATTTGAATTTGAAGGCATGCCATGTCGACATATCCTTTCTGTATTAAAGGGTAGAGGCTTGAATGAAATCCCAAGTTATTACATTGTTAATAGATGGACCAAATTGGCCACTAGTACCCCGATTTTTTATTATGATGGCAATGTATTGGAGGCATGTTCCAAATTGGAAGCTTCTAGTATTGAATTGAAATTAACAAGGATGAAAGGTGATGCTGGACCAAGTAAGTTAGATGAATTAGAGTCCTTTGTTAGTTCCAATGTACCAAAGGATGTTGATATTCTTCCTCCTCAACCTTCAAATACTAAAGGATGTGGCAAAAGGATCAAAGGAGGAAAAGAGAAGGCAACGGAACAATAA 5298 0.3845 MANHSATSSDFSYDVFLGYFNGGASNAFVDRLYQALLEKGINTFRDGVKRPAFEEIEKSRLSMLVLCEKYASSIECLDEIVKISDYIDNKRKQITVIFYKVEPSEVRKQKNSYEAAMDEHEKRNGQDPEKIEVWRKALTRVCDISGVHYKYNKDEPWLIEKIVKDTFTKIAPVPFQINRVVGLDAHFEHVKSVLDIESKDTVRMLGIYGAGGIGKTTFAAYLYDKIRHYFEAPTFLLHDREETNRSTKGLEDLQMKLLSQMGESTETKVGSIFKGGLEIKHRLGNRRVLLVLDDIDTIAKLKSLAGGCDWFGSGSRIIITTRDAAVLDNHDIEIKKYKMEELNDSDSLELFCWNAFDMSRPLEKFEDISHRAVSYAKGIPLALRVIGSNLKGRRIEEWEIELGKYRKVPHADIQSVLEISYYSLSELERKIFLDIACFFKGEKWVYVERILEACDFYPTFRVFDSKCLITIDENGCLEMHDLIRDMGREIVRKESPSSPGNRSRLWSHKDVLQVLKENSGSIKIEGIMLHPPRHEEIDHWSNTAFKKMKNLRILIVRNAKFSTGPSYLPNSLRLLDWTGFPSQSFPPEFYPERIVDFKLSHSPLIFAELLQIFKDLTFINLSQCQSITQIPNLSGAKNLRVLTLHRCHKLEGFDKSIGLYMSNLVYLSASECTMLKSFVPKMYFPSLEVLSFNFCTRLEHFPEVMRRMDKQLKIHLINTAIKEFPESIGKLTGLEYVDMSTCEGLRDLSRSFLLLPKLVTLKADGCYQLGESFKRFKESHLIANGCPNLKALCFSKANLSSEDLHIILEIFPNLEYLNVSHNGLISLPECIKISSQLKSLDISCCRNLLEIPELPLSIQSIDARHCQSLIPKALNVLWSKVCEETERIQVVMPKTEIPNWFDCVGSEDTPLFWARGKFPIVTLTFVFGEMKMDRSEFFPGVVSAESHKVVLHLFIDNKEICHKDYHCCSVGEHHVLLCDLRVLFNKEEWQGLDACIGDDWKAVQVQCESHLAMSHWGVYVYKQKTNMDNILFSFPNSTDPMSSSSLVPNKTPHIQHLDLVEAFGQYLHTFKLEQFASVANELLRWWRNTDAGVSEEASALVYGTSLMQEHEEFVWHVSRILEMLMEITPKRMDDSKFQSAGQLVVELLMARAQPMKKKGHETLHTNVSMPIILEECECHPCTDLTKAPRGRYWGSVVLELEEGDPLVWRIWKSKEAIGKRVSVVLSKCQLASTEGASTSGHGEILEEEFKDPALEKLMRGIEQDAMSLNKSLGKLKATIVPRDVPVSDKYMMETTIIRAQERLGRLGPNFKKTPYGKLRVEHDSQGTIHMQHELGVEHDAQSSTQNKLGRTKILIRNICMEIDDNDVYFSIPSKSSNDPLETSEEWVHECDEEIKPVVGKIFDTLDQGGDFYKRYAHLASFSRKHEINHSFYYDYEVDDEGKMKYVFWADGICQKNYSLFGDVISFDTTYNTNKYCMIFAPFTGINHHRQSITFGAALLADEKVESFEWLFKTFLKAMGGHKPIMIITDQDPAMKIAIENVFTEAQRHKELLAVADNDTFNTMPELKLHKDIEKHGREIYTHENFYIFQGELWRACVDCWVEGSREDNGQSLISIIEHIMVNGNKVSKLKEVVYNSSNHIAHCSCKIFEFEGMPCRHILSVLKGRGLNEIPSYYIVNRWTKLATSTPIFYYDGNVLEACSKLEASSIELKLTRMKGDAGPSKLDELESFVSSNVPKDVDILPPQPSNTKGCGKRIKGGKEKATEQ. 1766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09946 1765 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 13 749 IPR044974 GO:0006952
Seca4g09946 1765 Pfam NB-ARC domain 185 399 IPR002182 GO:0043531
Seca4g09946 1765 Gene3D - 5 168 IPR035897 -
Seca4g09946 1765 Pfam SWIM zinc finger 1641 1662 IPR007527 GO:0008270
Seca4g09946 1765 ProSiteProfiles Leucine-rich repeat profile. 813 834 IPR001611 GO:0005515
Seca4g09946 1765 SMART till_3 12 144 IPR000157 GO:0007165
Seca4g09946 1765 Pfam MULE transposase domain 1463 1547 IPR018289 -
Seca4g09946 1765 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 146 IPR035897 -
Seca4g09946 1765 ProSiteProfiles Zinc finger SWIM-type profile. 1630 1666 IPR007527 GO:0008270
Seca4g09946 1765 MobiDBLite consensus disorder prediction 1735 1765 - -
Seca4g09946 1765 Pfam TIR domain 13 170 IPR000157 GO:0007165
Seca4g09946 1765 SUPERFAMILY L domain-like 492 869 - -
Seca4g09946 1765 Gene3D - 169 338 IPR027417 -
Seca4g09946 1765 Gene3D Ribonuclease Inhibitor 714 896 IPR032675 -
Seca4g09946 1765 Gene3D Ribonuclease Inhibitor 533 713 IPR032675 -
Seca4g09946 1765 Gene3D - 341 425 IPR042197 -
Seca4g09946 1765 PRINTS Disease resistance protein signature 204 219 - -
Seca4g09946 1765 PRINTS Disease resistance protein signature 376 390 - -
Seca4g09946 1765 PRINTS Disease resistance protein signature 832 848 - -
Seca4g09946 1765 PRINTS Disease resistance protein signature 282 296 - -
Seca4g09946 1765 ProSiteProfiles TIR domain profile. 11 170 IPR000157 GO:0007165
Seca4g09946 1765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 435 IPR027417 -
Seca4g09946 1765 SMART 26again6 1641 1668 IPR006564 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09946 Seca-Chr4 232403977 232412881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09946 8 779 WRKY Transcription Factor Family AT4G12020 30.779 4.82e-76 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09946 - - tpra:123920929 1803.1