Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09945 ATGAAACTGGTAGTGGAGGTTATTAATGCTCATGATCTTATGCCCAAAGATGGTGAAGGATCAGCAAGTCCATTTGTGGAAGTAGAGTTTGAAAACCAAATAAGCAGAACCAGAACTGTCCCAAAGAATCTCAACCCCACTTGGAATCACAAACTATTCTTTCATTTAGATGCAACCAAACCTTACCATCACCAAACTATTGAAGTCTCAGTCTACAATGAGAAAAGACCTATTCCTGGCAGAAACTTCCTTGGAAGAGTAAGAATTCCTTGCACTAATATTGTCAAGGAAGGTGAAGAAGTGTATCAAATTTTCCCACTAGAAAAGAAGTTGTTTTTCTCACCTGTTAAGGGTGAGATAGGCCTTAAAATATACATTGCATCAGAGTCCAAACCCAAAGCTCTTTCCCCCATTTTCCCTTCAGAACTAGAAAATCTCTCACCTTCTATTCCACAGCAAGTACTGGACACCACTACTACTCCCTCAGTCACAGAAAATACAGGCTTAACAGACAGAACATTAGAAGCTGATCCCAAAGAAGAAGATCCTGTAGTTGGCACCCCAAAAGCAACTACAGAAGAAGCAGAAGCTCAGTCCAGTGGCATTGATATTGATCAAGAGCCAGAGGTAGAAAGCAAAGAACCTGTCCTACAGATAACTCAACAACTAGACAAACACCAAGTTCTTCAACAGCCAAGGATTTCAATAAAGAAACGGCCACAAAGTGCCACATTCACAATGCACTCAGTTGATCCTCAAGTCCATGAAAACTATAATCACAATGACACCAACCAACAGCCAAGGATTTCAATTAAGAGAAGACCAAGGGCACAAGGTACTCCTTCAACAATGCACTCAGTTAATCCACAAGTCCATCCAAGCTATGATGGAAGGAACAATCTCAGGGCCACCAACCCACAGCCAAGGATTTTATCAGAGACACCACGACCAGGTACTCCAGTCATAAGGCACTCAGTTAATCCCCAAGTCCACACTAACAATGATGAAAACTACAATCTCAGAGACACCAATCCACAGCTTGGAAGAGGGTGGATGAGTGGTAGTGAAAGATTCACAAGCACATATGATCTTGTTGAGCAGATGTTTTATCTATATGTTCGTGTAGTTAAAGCAAAGGATCTTCCCCCAGGTACCATCACCTCAAGCTGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTATAGAGGAAGAACAAAGCATTTGGAGAAGAAATTTAATCCTGAGTGGAACCAAGTATTTGCTTTCTCCAAGGACAGAATTCAATCTTCTATTCTTGAGGTCTTTGTGAAAGATAAAGATATGGTGGGTAGAGATGATTATCTTGGAAGGGTTGTATTTGACCTCAATGAGGTTCCAACAAGAGTTCCACCAGACAGTCCACTGGCTCCTCAGTGGTACAGACTTGAGGACTTGAGAGGAGATGGTAAGGTAAGGGGTGATATTATGCTTGCAGTTTGGATGGGAACACAAGCTGATGAAGCTTTCTCTGATGCTTGGCATTCTGATGCTGCCACTGTATATGGTGAAGGTGTTTTTAACATCAGATCAAAGGTTTATGTGTCTCCAAAACTGTGGTATCTCAGGGTCAATGTCATTGAAGCTCAAGATGTGATCCCTAGTGACAGAAACCGCCTACCAGAGGTTTCTGTCAAAGCTCAAGTGGGCTGCCAAGTACTGAGGACCAAGATATGTCCCACTAGAACAACTACTCCACTTTGGAATGAAGATTTGGTTTTTGTAGTAGCTGAACCATTTGAGGAGCATTTGACAATTACTGTGGAGGATCGTGTGCACCCTTCAAGAGATGAAGTACTTGGTAAGATAAACCTACCATTGAACCTCTTTGAGAAGAGGCTAGACCATAGGCCAGTTCATTCTCGTTGGTTCAACCTTGAGAAATTTGGTTTTGGAGTGCTAGAAGCTGATAGGAGGAATGAGTTTAAATTTTCAAGCAGGATTCACATGAGAGTTTGCCTTGAAGGTGGATACCATGTCCTAGATGAGTCCACTTTGTACATAAGTGATCAAAGACCAACAGCAAGACAGCTATGGAAGCAGCCTATTGGGGTACTTGAAGTAGGCATCTTAGGAGCACAAGGGCTTCTCCCAATGAAGATGAAAGATGGCCGTGGTAGCACAGATGCATACTGTGTTACCAAGTATGGTCAGAAATGGGTCCGAACCAGAACACTTCTAGACACTTTTAGTCCTAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCTTGCACTGTGATAACATTGGGGGTTTTTGATAACTGCCATTTAGGTGGAGGGGAAAAAGCTCCTGGTGGCAATGCAGCACAAGATTCTAGAATTGGAAAGGTAAGGATTAGGCTATCAACACTAGAAGCTAATAAGATTTACACCAATTCTTACCCACTTCTTGTTTTACACCCACATGGAGTTAAGAAAATGGGTGAGCTTCAACTAGCAGTAAGGTTCACTCCATTCTCACTAGCTAACATGATTCATGTCTATGGCCAACCCTTACTCCCCAAGATGCATTATTTACATCCTTTCACAGTTAATCAAATAGACTACTTAAGGTACCAAGCCATGAATATTGTAGCTGTGAGGCTAGGCAGAGCTGAACCCCCTCTGAGAAAGGAAGTAGTGGAGTACATGTTGGATGTTGATTCTCATATGTGGAGCATGAGAAGAAGCAAAGCTAACTTCTTTCGCATCATGTCCCTTTTCTCTGGTATGATCACAATGGGGAGATGGTTCAATGATGTTTGTCATTGGAAGAACCACATCACATCAGTTCTAGTTCACATTCTCTTTCTGATACTGATATGGTACCCTGAATTGATACTACCAACTATGTTTCTCTACATGTTCTTGATTGGTCTCTGGAACTATAGGTTCCGTCCTAGACACCCACCTCATATGGATACTAAACTCTCATGGGCAGAAGCTGTTCACCCAGATGAACTTGATGAAGAGTTTGACACATTCCCAACTTCAAGATCACATGACACAGTGAGAATGAGGTATGACAGGCTTAGAACTGTGGCAGGTAGGATTCAGACAATTGTTGGGGACATAGCTACACAGGGAGAGAGATTTCAATCTCTTCTAAGCTGGAGAGACCCTAGAGCAACCAGCCTCTTTGTGGTGTTTAGCTTTTGTGCAGCTGTGGTTCTGTATGCAACTCCATTCAGAGTGGTGGCTTTGGTAACAGGTTTGTATCATTTGCGACATCCAAAGTTTAGGAGCAAGTTACCTTCTGTACCCAGCAATTTCTTCAAGAGGCTCCCAGCTAGAACAGATAGTTTACTGTGA 3333 0.4239 MKLVVEVINAHDLMPKDGEGSASPFVEVEFENQISRTRTVPKNLNPTWNHKLFFHLDATKPYHHQTIEVSVYNEKRPIPGRNFLGRVRIPCTNIVKEGEEVYQIFPLEKKLFFSPVKGEIGLKIYIASESKPKALSPIFPSELENLSPSIPQQVLDTTTTPSVTENTGLTDRTLEADPKEEDPVVGTPKATTEEAEAQSSGIDIDQEPEVESKEPVLQITQQLDKHQVLQQPRISIKKRPQSATFTMHSVDPQVHENYNHNDTNQQPRISIKRRPRAQGTPSTMHSVNPQVHPSYDGRNNLRATNPQPRILSETPRPGTPVIRHSVNPQVHTNNDENYNLRDTNPQLGRGWMSGSERFTSTYDLVEQMFYLYVRVVKAKDLPPGTITSSCDPYVEVKLGNYRGRTKHLEKKFNPEWNQVFAFSKDRIQSSILEVFVKDKDMVGRDDYLGRVVFDLNEVPTRVPPDSPLAPQWYRLEDLRGDGKVRGDIMLAVWMGTQADEAFSDAWHSDAATVYGEGVFNIRSKVYVSPKLWYLRVNVIEAQDVIPSDRNRLPEVSVKAQVGCQVLRTKICPTRTTTPLWNEDLVFVVAEPFEEHLTITVEDRVHPSRDEVLGKINLPLNLFEKRLDHRPVHSRWFNLEKFGFGVLEADRRNEFKFSSRIHMRVCLEGGYHVLDESTLYISDQRPTARQLWKQPIGVLEVGILGAQGLLPMKMKDGRGSTDAYCVTKYGQKWVRTRTLLDTFSPKWNEQYTWEVYDPCTVITLGVFDNCHLGGGEKAPGGNAAQDSRIGKVRIRLSTLEANKIYTNSYPLLVLHPHGVKKMGELQLAVRFTPFSLANMIHVYGQPLLPKMHYLHPFTVNQIDYLRYQAMNIVAVRLGRAEPPLRKEVVEYMLDVDSHMWSMRRSKANFFRIMSLFSGMITMGRWFNDVCHWKNHITSVLVHILFLILIWYPELILPTMFLYMFLIGLWNYRFRPRHPPHMDTKLSWAEAVHPDELDEEFDTFPTSRSHDTVRMRYDRLRTVAGRIQTIVGDIATQGERFQSLLSWRDPRATSLFVVFSFCAAVVLYATPFRVVALVTGLYHLRHPKFRSKLPSVPSNFFKRLPARTDSLL. 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09945 1110 Gene3D C2 domain 366 512 IPR035892 -
Seca4g09945 1110 MobiDBLite consensus disorder prediction 254 312 - -
Seca4g09945 1110 CDD C2B_MCTP_PRT_plant 370 496 IPR047257 -
Seca4g09945 1110 MobiDBLite consensus disorder prediction 254 322 - -
Seca4g09945 1110 FunFam C2 domain-containing protein 519 666 - -
Seca4g09945 1110 Gene3D C2 domain 677 833 IPR035892 -
Seca4g09945 1110 Gene3D C2 domain 520 665 IPR035892 -
Seca4g09945 1110 CDD C2A_MCTP_PRT_plant 2 128 - -
Seca4g09945 1110 Pfam Plant phosphoribosyltransferase C-terminal 955 1110 IPR013583 -
Seca4g09945 1110 CDD C2D_MCTP_PRT_plant 697 827 IPR047255 -
Seca4g09945 1110 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 696 832 IPR035892 -
Seca4g09945 1110 ProSiteProfiles C2 domain profile. 513 636 IPR000008 -
Seca4g09945 1110 FunFam C2 domain-containing protein 679 834 - -
Seca4g09945 1110 CDD C2C_MCTP_PRT_plant 533 685 IPR047258 -
Seca4g09945 1110 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 370 509 IPR035892 -
Seca4g09945 1110 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 2 1110 IPR047259 -
Seca4g09945 1110 MobiDBLite consensus disorder prediction 151 202 - -
Seca4g09945 1110 ProSiteProfiles C2 domain profile. 1 105 IPR000008 -
Seca4g09945 1110 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 532 687 IPR035892 -
Seca4g09945 1110 SMART C2_3c 2 103 IPR000008 -
Seca4g09945 1110 SMART C2_3c 370 467 IPR000008 -
Seca4g09945 1110 SMART C2_3c 533 633 IPR000008 -
Seca4g09945 1110 SMART C2_3c 697 807 IPR000008 -
Seca4g09945 1110 MobiDBLite consensus disorder prediction 172 187 - -
Seca4g09945 1110 Pfam C2 domain 696 810 IPR000008 -
Seca4g09945 1110 Pfam C2 domain 532 638 IPR000008 -
Seca4g09945 1110 Pfam C2 domain 2 106 IPR000008 -
Seca4g09945 1110 Pfam C2 domain 370 473 IPR000008 -
Seca4g09945 1110 FunFam C2 domain-containing protein 365 511 - -
Seca4g09945 1110 MobiDBLite consensus disorder prediction 151 171 - -
Seca4g09945 1110 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 2 135 IPR035892 -
Seca4g09945 1110 ProSiteProfiles C2 domain profile. 674 808 IPR000008 -
Seca4g09945 1110 Gene3D C2 domain 1 127 IPR035892 -
Seca4g09945 1110 ProSiteProfiles C2 domain profile. 352 473 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09945 Seca-Chr4 232370761 232374180 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09945 2 1110 Lipid Metabolism Gene Families AT5G48060 65.143 0.0 1445
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09945 - - gmx:100816204 1934.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g04924 8 136426071 136429468 Seca4g09945 4 232370761 232374180 ECH
Seca2g04110 2 124132217 124135969 Seca4g09945 4 232370761 232374180 ECH
Seca8g08179 8 179187542 179192665 Seca4g09945 4 232370761 232374180 ECH
Seca4g09945 4 232370761 232374180 Seca4g09945 4 232370761 232374180 ECH