LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g09943	ATGTTCCGTGGTGATCAGGATTTTGTCAAGAGCTTTTTTCATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCGAGGGTGCACCAAAACTATAACATTTCAAACAGATTTGCTTTGTAATACTTGTGGTGGGAGTGGTGTTCCTCCTGGTACAAGACCCGAAACTTGTAAGCGATGTAAAGGGTCAGGAGTGGTATTTGTACAAGCTGGCATTTTCAGAATGGAGAGTACTTGTGGTACCTGTAAGGGAACTGGAAAAATTGTATCGAGTTTCTGCAAATCTTGCAAGGGTGCGAAGGTTATCAAAGGAATGAAGTCAGTCAAGTTGGATATTATGCCTGGGATAGACAACAACGAGACCATAAAGGTTTTTAGAAGTGGTGGAGCAGATCCTGACGGAGATCATCCTGGTGATCTTTATGTTACTATCAAGGTTAGGGAAGATCCTGTTTTTCGCAGAGAAGGATCTGATATTCATGTAGATGCTGTTTTAAGTATCACTCAGGCAATTTTAGGCGGAACCATTCAAGTCCCAACTCTTACTGGAGATGTTGTTCTGAAGGTTCGCCCGGGCACCCAACCTGGTCAAAAGGTGGTTTTGAAAAGGAAAGGGATCAAGACAAAAAATTCCTACACATTTGGGGATCAATATGTTCATTTTAATGTCAGCATCCCAACAAACCTGACAGAGAGACAGCGTGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGAGGAATGTGATAAACGGAGAGCTGCTTCAGCTTCTGGTTGA	804	0.4216	MFRGDQDFVKSFFHQNIGGEDVKTFIELSFMEAVRGCTKTITFQTDLLCNTCGGSGVPPGTRPETCKRCKGSGVVFVQAGIFRMESTCGTCKGTGKIVSSFCKSCKGAKVIKGMKSVKLDIMPGIDNNETIKVFRSGGADPDGDHPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKRKGIKTKNSYTFGDQYVHFNVSIPTNLTERQRELIEEFAKEEQEECDKRRAASASG.	268

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g09943	267	Gene3D	-	41	113	-	-
	Seca4g09943	267	FunFam	Molecular chaperone DnaJ	41	113	-	-
	Seca4g09943	267	Pfam	DnaJ central domain	49	109	IPR001305	GO:0031072\|GO:0051082
	Seca4g09943	267	SUPERFAMILY	HSP40/DnaJ peptide-binding domain	19	158	IPR008971	GO:0006457\|GO:0051082
	Seca4g09943	267	FunFam	Chaperone protein dnaJ 1, mitochondrial	156	262	-	-
	Seca4g09943	267	Pfam	DnaJ C terminal domain	25	235	IPR002939	-
	Seca4g09943	267	CDD	DnaJ_zf	49	109	IPR001305	GO:0031072\|GO:0051082
	Seca4g09943	267	SUPERFAMILY	DnaJ/Hsp40 cysteine-rich domain	36	111	IPR036410	-
	Seca4g09943	267	Gene3D	-	156	265	-	-
	Seca4g09943	267	CDD	DnaJ_C	20	238	-	-
	Seca4g09943	267	ProSiteProfiles	Zinc finger CR-type profile.	36	114	IPR001305	GO:0031072\|GO:0051082
	Seca4g09943	267	PANTHER	DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED	7	260	-	-
	Seca4g09943	267	SUPERFAMILY	HSP40/DnaJ peptide-binding domain	160	246	IPR008971	GO:0006457\|GO:0051082
	Seca4g09943	267	Gene3D	-	18	154	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g09943	Seca-Chr4	232358958	232363368	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g09943	K03686		-	gmx:100799735	510.76

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g09943	4	232358958	232363368	Seca4g09943	4	232358958	232363368	ECH