Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09928 ATGAGTGTTGTGTATAGTCATGCTCTCAAGTACTCTGAAGGTGAGGCAATGAGGAACCAAGAAATGGATTCAAGTTTTGGTTTCCCACAACAAAATTGTCACCAGCAAAATTCTGGACTATTGCGGTTACGTTCTGCTCCAAGCTCATTGCTGATAAACCTTGTGGATAACATTAACAACATTGGCTGTGTCAATGAGGAAGCTTTCAGAAATGAGGATCATCAGCATTATCTTTCTCCAACTTCAGAAATGGAAACCATGTTGGCAAAATTGATTTCATCCAACAATGGGTTGGCCAATTCAGAATCTTTGCAAGAGTTTGGAAGCAAGCCTGTAGTGAAGCAAGAAGAAATGGACCTTGTTTCACAGGAACCACAACAGAATGGTTACTCTTATGTATCCCCAGATCAGTTAATTTACCAACAACCTCAGCAAATTCAAGGCTTGCCAAATGATTCTTTAGGTGCTGCAGGGAATAATTTTGATAGCTCATTCAATTCAGTGAGTTCCCTGGCTTCAGAGAATTACACACAAACTAAAATGGGTTCTAGCAATTGCTCCAATCTCATTAGGCAAAAGAGCTCCCCTGCTGGATTTTTCTCCAATTATTCAGTTGATAATGGTCTTGCACCAATGAGAGAGGTAGGAAGTTTTAGAGCCTGTGATGTCTCAAATGGACAAGCTACTACATCTTCTAGTGGATTGCATGGTTCCTTGAACTTCTCATCTAGGCCATCTTCTTGCTCCAGCAGGATGCCACAGATTGTTGAAAGTGAACATGAAGGCCTGCAAGCAAATTGTGTTGAAAGTAGGAGCCTGGGAAACAGCTTCACCAGTGACTTCTGGGATGGTTCTGCATTCAATGCCTCCAAAACAGCCAGAAACAATGGTGAAATCATGTTTACCACTTCAAATGGTTTGGACACTCACGATGTAGATTTTGGATATCAAAAACTTGGTTTGAGTCACCATTTGAGTCTGCCTAGCTCTTCTAAGATGCAGAAGCTTTATCAAATTCAAGGATCTGTTCCATGTAAAATTCGAGCTAAAAGAGGCTTTGCCACTCATCCAAGGAGCATTGCAGAGAGGGAAAGAAGAACTCGAATTAGTGCAAGAATCAGGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCAGATTTGTTGGATTTTGCAGTTGATTATATTAAAGACCTGCAGAAACAAGTCAAGACACTCACAGAAACTAGGGCAAAGTGCACTTGTACAAGTAAATAG 1269 0.4082 MSVVYSHALKYSEGEAMRNQEMDSSFGFPQQNCHQQNSGLLRLRSAPSSLLINLVDNINNIGCVNEEAFRNEDHQHYLSPTSEMETMLAKLISSNNGLANSESLQEFGSKPVVKQEEMDLVSQEPQQNGYSYVSPDQLIYQQPQQIQGLPNDSLGAAGNNFDSSFNSVSSLASENYTQTKMGSSNCSNLIRQKSSPAGFFSNYSVDNGLAPMREVGSFRACDVSNGQATTSSSGLHGSLNFSSRPSSCSSRMPQIVESEHEGLQANCVESRSLGNSFTSDFWDGSAFNASKTARNNGEIMFTTSNGLDTHDVDFGYQKLGLSHHLSLPSSSKMQKLYQIQGSVPCKIRAKRGFATHPRSIAERERRTRISARIRKLQDLFPKSDKQTSTADLLDFAVDYIKDLQKQVKTLTETRAKCTCTSK. 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09928 422 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 356 415 IPR036638 GO:0046983
Seca4g09928 422 Pfam Helix-loop-helix DNA-binding domain 359 404 IPR011598 GO:0046983
Seca4g09928 422 SMART finulus 359 409 IPR011598 GO:0046983
Seca4g09928 422 Gene3D - 355 420 IPR036638 GO:0046983
Seca4g09928 422 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 353 403 IPR011598 GO:0046983
Seca4g09928 422 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 87 414 - -
Seca4g09928 422 FunFam Transcription factor bHLH130 family 354 422 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09928 Seca-Chr4 232193610 232196943 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09928 30 421 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 35.627 4.27e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g09928 HLH 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09928 - - gmx:100795896 506.908
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g07049 4 149612909 149616257 Seca4g09928 4 232193610 232196943 ECH
Seca4g09928 4 232193610 232196943 Seca4g09928 4 232193610 232196943 ECH