Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09927 ATGGACAAGGGACCACCTCCTAGCCTCTTTGTTAATGATGGTTCATTCATGGAAAGGTTCAAGCAGCTTCAACAAGAGCAGGAGAAGGGGAAGAATGCCAAATTAGAGGAGTCTAAACCAATAAAAGTTGTTTCAGGTCCGCTGACTCCTAATCCCTCCATTAGTAAGGTTAATGATACACGGAAAACTTCCCAAGCTGGCTCCAGTGGCAAACTTGCTTTCAGTTTAAAACAAAAGTCAAAGCTAGTGCCACCCCCTGTTAAGTTGGCTGATGAGGATGAAGAAGAAACAGATGCTGGGGATGTTTCAAATGATGCACCGCCAAAGCGGCAAAAATTGGTTCAGGATGATGGCACTGAGCAATCATCAAGACAGCTTGATGTTGCACCTCCTTCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTAGCAAGTTTTGTGGCTAAAAATGGAAGGCAATTTGAAGATGTTACACGCCAAAAAAATCCTGGGGATACACCTTTCAAGTTTTTATTTGATGAGAAATGTCATGACTACAAATATTATGAATATCGACTTGCTCAAGAGGAAAAGGCCCTTTCACAGTCACAGTCCAGGGAAACACAGGCAAATCGGGGCACAAGCATTCCATCTTCCAGACCAACAAATGGTCCTCAAAGATCATCTCAGCAGCATTCAACTTACCAAATCCCTGCATCTGCTCTATATGAAAGTGCTGAAGTACCAGGTGCTTCTGGATCTTCAGTTCAAGCATTATCAGTTGGAGGCTCTGTTGCAGATGAGCCCAGTGGATCATCAAATGCTAGTTCCTTAGCGCTGATGGAGTTCTACATGAAGAAAGCTGCACATGAAGAAAAGTTGAGACAACCTAAGCAGTCAAAAGATGAGATGCCTCCTCCTGCTTCTCTTCAAGGTTCGAATTTTGATAATATCACAGCTTCAGGGAAAAAAGGCCATCACATGGGTGATTATATTCCTCTGGAAGAACTTGAAAAGTTCATGGCTAGCTGTAACGATGCAGCAGCACAGAAAGCTGCAAAGGAGGCCGTGGAGAGGGCCAAAATCCAGGCTGATAATGTCGGCCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTGGGGAGCTCCAGGAAGGGTATTTCAGATCCTATCATGGCAGGCAATGTTAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAAGATGACATATATGAGCAGTACAAAAAGCGGATGATGCTTGGCTACCGTTACAGACCCAATCCTCTGAATAATCCTCGCAAGGCTTATTACTGA 1329 0.4447 MDKGPPPSLFVNDGSFMERFKQLQQEQEKGKNAKLEESKPIKVVSGPLTPNPSISKVNDTRKTSQAGSSGKLAFSLKQKSKLVPPPVKLADEDEEETDAGDVSNDAPPKRQKLVQDDGTEQSSRQLDVAPPSPSDPTVKKVADKLASFVAKNGRQFEDVTRQKNPGDTPFKFLFDEKCHDYKYYEYRLAQEEKALSQSQSRETQANRGTSIPSSRPTNGPQRSSQQHSTYQIPASALYESAEVPGASGSSVQALSVGGSVADEPSGSSNASSLALMEFYMKKAAHEEKLRQPKQSKDEMPPPASLQGSNFDNITASGKKGHHMGDYIPLEELEKFMASCNDAAAQKAAKEAVERAKIQADNVGHRLLSKMGWKEGEGLGSSRKGISDPIMAGNVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRYRPNPLNNPRKAYY. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09927 442 MobiDBLite consensus disorder prediction 23 38 - -
Seca4g09927 442 ProSiteProfiles G-patch domain profile. 359 406 IPR000467 GO:0003676
Seca4g09927 442 SUPERFAMILY Surp module (SWAP domain) 124 196 IPR035967 GO:0003723|GO:0006396
Seca4g09927 442 Gene3D Surp module 112 198 IPR035967 GO:0003723|GO:0006396
Seca4g09927 442 Pfam G-patch domain 360 403 IPR000467 GO:0003676
Seca4g09927 442 MobiDBLite consensus disorder prediction 192 235 - -
Seca4g09927 442 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Seca4g09927 442 MobiDBLite consensus disorder prediction 192 269 - -
Seca4g09927 442 MobiDBLite consensus disorder prediction 301 315 - -
Seca4g09927 442 MobiDBLite consensus disorder prediction 245 269 - -
Seca4g09927 442 MobiDBLite consensus disorder prediction 23 140 - -
Seca4g09927 442 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Seca4g09927 442 MobiDBLite consensus disorder prediction 48 75 - -
Seca4g09927 442 SMART G-patch_5 357 404 IPR000467 GO:0003676
Seca4g09927 442 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 442 IPR040169 -
Seca4g09927 442 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Seca4g09927 442 MobiDBLite consensus disorder prediction 102 117 - -
Seca4g09927 442 MobiDBLite consensus disorder prediction 286 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09927 Seca-Chr4 232165840 232171605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09927 333 415 C2H2 Transcription Factor Family AT5G26610 38.636 1.14e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09927 K13096 - gmx:100786213 686.797