Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09920 ATGGGGAGCGGCGATCGTTCCGATCACCGGACGTTCAAGGCCAATTTCACGGCCGATGGAGCGGCGGTGCTGAGAGAAAGAGTGAATGAGAAGCTGGAGGAGTTCATGGGGGATTACACTGATGACACTCTTGTGGAATATGTTATTGTGTTGCTGAGGAATGGTAAGAGCAAAGATCAAGCGAAGAATGAGTTGAATGTTTTTTTGGGGGATGACAGTGATTCTTTTGTATCCTGGTTGTGGGAACATTTGGCTTTGAATATAGATTCGTATGTACAGCCTAAAGAATTGCAGGGTGAAGCTCCCAAAAGAAAGCTTATATCAGAGGTCCAATCTGGTGGTGATGGTATTAAACATTTGAATTCACAGTCAGAAAGGGTAAAGTCTAATAAGGTATCTAGTAGTCGCCGTAACAAAGATTGGAAAGCATTAGTGGAGAGAGAAGCTGAAGCACCACCTCTATGGAGCTCTGAGGTCGACACTACTCATTTGGAGGAAAAGGCCCAATCTAAAGTCAACCGTGGTCCAAGGTCACTCTCGCCTCCACCACCAGTTCAGAGGAAAAGGGGTCGGGCTGTTGAACAACAGAAGACTAAGAGGGATTTGGTTTCACAAGTAACTATTGATGCTCCTCGAAGGCTGCTTCAGTTTGCAGTGCGAGATGCAGTGGCTACTTCAAGGCCATCTAATTCAGGCATATCAGTGGAGCCCTCTTTAAAGCGTCTTCGTTCTGTAGTTTCTACATCCTCTGTTGATTCATCCTTGGTTGAACGTCCTCAAAGGATGCAGGCAATTTCCAGGGTAGCAAACCCCATGGCAACAGTGATTAAGGCTGTGGCGGAAGCTGCTGAAGATGTGGTAAAATTCAAATCCTCAGGAAATGTATTTGATCGGCTTGGTTGTGATATGAATCCATCAGGTGGTAACAGCCAGCTTGATGATAGTTACCAACATCAGGAGCAAAGCCCATTATCGTATCTTCAAAGAACTGACAATGGTGATCAGTATGCTGCAAATATGACGTTGGAGGATGAAACTGGTTTTCCCTCTGGTTCTACTTCAGATAATGAAGGGTTTGATGACGTTAATGTCATGGGTCATAGGGTGAGCAGATTTTCTCAGTCAGGTTCCTCTGGTGGAAACAGGGGTGATGATTCACTGATGGTGCACTATAGTATAGCCAAAAATGATGCTGATAGTGTGCATCTAAATCGGAATAGAGACAAGGAGCAAACTGTTGCTGCATCTAACACTTCCAAGATAGTGAACATTTCTGTTAATGTAAATACTTGGAAGCCACCTGGCTCAGCCCAATACAAGGAACCGAGAAAGGTTGCAGAATTAGATGGTCAGAAAACTTTAAGCAGTGAACTTGAAGCTCCAAGATCTGGTCTGAGACTGGTGAAGGAGAATGCTAAGGCTGTGAAAATTAAGAATGGGAACGCAAACGCTACTTTGGATTTGCAGAAAGAGTCTCTGAAGGAACAGCCATATACTTCCGTAGACTTGTCATCACTTATCTTTCTATCTGAAGGTGTACAATTTATTGAAGCTCTTGTGTTCTCAGGTTCAAGTGCCATTGGTCGTTTGTTAGAGGATGCAGATTCACGAACCATTTTTGCTAGCAATGTTCATTTTGCTGCAACCAAAGATGGCCTATCTCGGCATTTTAATAAATTTGGGGAAGTGCTAAAAGTTGTTATAGTTACTGATGCGACGACAGGGCAACCAAAAGGGGCAGCTTATGTGGAGTTCATGCGTAAAGAAGCAGCAGATAATGCATTATCACTGGATGGAACTTCCTTTATGTCACGTATTCTTAAGGTTGTGAGGAAAAGTGCTGCACATCAAGAGTATGCTCCAGCTGTGCCATGGCCACGTGGAATAGGATCTCCGTTTCCTTCTGCTAGATTTTCGAGAGTTCCGTTTTCAAGAGGTATTAGTATTACTGGGTCATTTAGGCCTAGGCCCCCAATTAAATTTGGTGCCAGGAGTTTGCAATGGAAGCGGGATGCTCAGGGCACTTCATCTGACAATGGCACAGCTATAAATAACAGCAGTATTTCTGCTCCTTCTGCTCGAGGTCTCACCTACGTGAGAACAGAATCTAAGTTAGATGGCAGCTTGAGTACCACGTAG 2139 0.4418 MGSGDRSDHRTFKANFTADGAAVLRERVNEKLEEFMGDYTDDTLVEYVIVLLRNGKSKDQAKNELNVFLGDDSDSFVSWLWEHLALNIDSYVQPKELQGEAPKRKLISEVQSGGDGIKHLNSQSERVKSNKVSSSRRNKDWKALVEREAEAPPLWSSEVDTTHLEEKAQSKVNRGPRSLSPPPPVQRKRGRAVEQQKTKRDLVSQVTIDAPRRLLQFAVRDAVATSRPSNSGISVEPSLKRLRSVVSTSSVDSSLVERPQRMQAISRVANPMATVIKAVAEAAEDVVKFKSSGNVFDRLGCDMNPSGGNSQLDDSYQHQEQSPLSYLQRTDNGDQYAANMTLEDETGFPSGSTSDNEGFDDVNVMGHRVSRFSQSGSSGGNRGDDSLMVHYSIAKNDADSVHLNRNRDKEQTVAASNTSKIVNISVNVNTWKPPGSAQYKEPRKVAELDGQKTLSSELEAPRSGLRLVKENAKAVKIKNGNANATLDLQKESLKEQPYTSVDLSSLIFLSEGVQFIEALVFSGSSAIGRLLEDADSRTIFASNVHFAATKDGLSRHFNKFGEVLKVVIVTDATTGQPKGAAYVEFMRKEAADNALSLDGTSFMSRILKVVRKSAAHQEYAPAVPWPRGIGSPFPSARFSRVPFSRGISITGSFRPRPPIKFGARSLQWKRDAQGTSSDNGTAINNSSISAPSARGLTYVRTESKLDGSLSTT. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09920 712 MobiDBLite consensus disorder prediction 669 689 - -
Seca4g09920 712 Pfam PWI domain 23 85 IPR002483 GO:0006397
Seca4g09920 712 SUPERFAMILY RNA-binding domain, RBD 533 612 IPR035979 GO:0003676
Seca4g09920 712 Gene3D - 522 619 IPR012677 -
Seca4g09920 712 Gene3D PWI domain 12 92 - -
Seca4g09920 712 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 539 607 IPR000504 GO:0003723
Seca4g09920 712 MobiDBLite consensus disorder prediction 664 689 - -
Seca4g09920 712 MobiDBLite consensus disorder prediction 113 202 - -
Seca4g09920 712 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14 4 677 IPR040366 GO:0008143|GO:0043488|GO:1900364
Seca4g09920 712 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 537 614 IPR000504 GO:0003723
Seca4g09920 712 MobiDBLite consensus disorder prediction 121 147 - -
Seca4g09920 712 SMART rrm1_1 538 610 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09920 Seca-Chr4 232057758 232066343 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09920 511 607 C2H2 Transcription Factor Family AT2G19380 30.693 5.66e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09920 - - lang:109347945 854.358