Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09906 ATGACAGATCCTCAATCCAATTTATTTGATGAATGGTTCAACTTCATGCTTCTCCACCCTCACCACTCTTCTTCTTCCTCTCAATCCAACAATATGTGTTCATCATCTTCATCTTCAATATCATACCCTTTTCCTTACTCAAACAACAGCAACAGGTTTGGATTAATTCAATCTGAAGCCTCATCCTCCTCTGCTGCAGCTCCACCTTCTTCCCCTCCTCTCAGAGAGGCCCTTCCTCTCATTAACAAGCTAACCCTCAAAAATCAACATGATCAAAATTATGAACCCTCAAACAGTAATAGAACAATAGAAGAGGCTTTGACTGGTACTGATCAAGAAGAGGATGATGAAACTGTGACTGTTGCCCTACACATAGGGCTTCCTAGAATGAGTGGTGGTACTTCCTCTGATCTGGGATCAAGGAATATGGTCTCAATCTCAACTTCTTCAATAGAAAAGGAGACCATTTCTGAACAACCCTTGGATAGATTGAACAAGGGTCAGTATTGGATTCCAACCCCTTCTCAGATTCTCATTGGTCCTACACAGTTCTCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAATAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCTGATTCTCTAAAAGGAACACAGCCAACAGCTATGTTAAGGCTTCCATGCTATTGTTGTGCACCAGGTTGCAAGCACAACATTGACCACCCAAGAGCAAGGCCTCTCAAGGATTTCAGAACTCTACAAACACATTATAAGAGAAAGCATGGCATAAAACCCTATATGTGCAGAAAATGTGGCAAAGCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATATGGTATTGTTTATGTGGGTCAGATTTCAAACACAAAAGGTCTCTAAAAGATCACATCAAAGCCTTTGGCTATGGCCATGGAGCTTTTGGCATTGATTGCTTGCAAGAAGAAGATGAAGCAACCTCAGAAATTGAACATGATGGGGAAGGCTCATTGTGA 1038 0.4143 MTDPQSNLFDEWFNFMLLHPHHSSSSSQSNNMCSSSSSSISYPFPYSNNSNRFGLIQSEASSSSAAAPPSSPPLREALPLINKLTLKNQHDQNYEPSNSNRTIEEALTGTDQEEDDETVTVALHIGLPRMSGGTSSDLGSRNMVSISTSSIEKETISEQPLDRLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCYCCAPGCKHNIDHPRARPLKDFRTLQTHYKRKHGIKPYMCRKCGKAFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEATSEIEHDGEGSL. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09906 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 184 211 IPR013087 -
Seca4g09906 345 Gene3D Classic Zinc Finger 247 317 - -
Seca4g09906 345 FunFam zinc finger protein WIP2-like 183 206 - -
Seca4g09906 345 SUPERFAMILY beta-beta-alpha zinc fingers 252 288 IPR036236 -
Seca4g09906 345 Pfam Zinc finger, C2H2 type 184 203 IPR013087 -
Seca4g09906 345 PANTHER ZINC FINGER PROTEIN WIP2 25 338 IPR043584 GO:0003700|GO:0010468
Seca4g09906 345 SUPERFAMILY beta-beta-alpha zinc fingers 178 206 IPR036236 -
Seca4g09906 345 FunFam Zinc finger protein WIP2 237 319 - -
Seca4g09906 345 ProSiteProfiles Zinc finger C2H2 type domain profile. 268 288 IPR013087 -
Seca4g09906 345 SMART c2h2final6 268 288 IPR013087 -
Seca4g09906 345 SMART c2h2final6 184 206 IPR013087 -
Seca4g09906 345 Gene3D Classic Zinc Finger 183 206 - -
Seca4g09906 345 ProSitePatterns Zinc finger C2H2 type domain signature. 186 206 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09906 Seca-Chr4 231861329 231863431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09906 1 338 C2H2 Transcription Factor Family AT3G57670 54.167 1.42e-126 366
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g09906 zf-C2H2_6 9.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09906 - - gmx:100794446 520.39