Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09899 ATGGATGAGAATAGTGGTTCCTATGAACCCCTTAACAAGTGGAAAATGCCTCTCTTCGTTTTCTTCAAAGACGCAAGACTTGTATTCAAGCTAGATGCACTTTCTCGGGAGATATTAGGGATTGCAGTTCCCTCTGCATTGGCTGTTGCTGCTGATCCAATTGCTTCCCTCATTGACACAGCTTTTATTGGTCACTTGGGACCGGTGGAACTTGCTGCTGCTGGAGTTTCCATTGCTTTGTTCAACCAAGCTTCAAGGATTACCGTTTTCCCTCTGGTTAGTATTACAACTTCCTTTGTTGCTGAAGAAGATACTCTTGAAAAGCTTAATGCCAAAGCAGAATCCCAAAATGATGATGATAAGGCTAAGCTCAGCGAAGTAACGCCTAAGGATATTCATGATGTGGAAAATGATGGCAAGTGTTCTTCCTTCAAAGTTATTAGTGATCATAAGAGTAAGGAGAAAGTTAGAAAGAAGAAGCGACACATTGCATCAGCATCAACAGCACTACTTTTTGGCACAATCGTTGGCCTCCTTCAAGCTGCAATCCTTATATTTGGAGCCAAACCTCTATTAGGTGCCATGGGTCTCAAACATGATTCTCCAATGCTAAAACCAGCAGAGAAGTACTTGAGATTGAGAGCGTACGGTTCTCCAGCTGTTCTTCTCTCCTTGTCCATGCAAGGAATCTTTCGAGGGTTCAAGGACACAACAACTCCTTTATACGTCATTGCTTCTGGATACGCATTGAATGTGGTATTGGACCCAATACTCATCTTTTTATTGAAACTGGGCCTCGAAGGTGCAGCCATGGCACATGTTCTCGCTCAGTACTTGATGACATTCACCCTCTTACTGATTTTGGCGAAAAAAGTGTATCTCCTACCTCCAACCTTAAAGGATTTGCAGATTTTTCGTTTCCTTAAAAATGGAGGTCTATTGCTAGCAAGGGTAGTAGCAGTGACATTCTGTATGACCTTTGCAGCATCATTGGCAGCAAGGTTAGGTCCAATTCCTATGGCTGCATTCCAACCCTGCTTACAAGTCTGGTTGACTTCATCCCTTCTTGCTGATGGCTTAGCTGTTGCTGTACAGTTTGTTGCTGCTACCCAACCAATCAATTCATTAGCCTTCGTCTTTGATGGTGTGAACTATGGTTCTTCTGATTTTGCATATTCCGCATACTCCTTGGCAAGTGATCACATACCTTTAGTTTCCTTTATTTATCATTTTCCAATGCAAAAATGTTATCTTTAG 1257 0.4224 MDENSGSYEPLNKWKMPLFVFFKDARLVFKLDALSREILGIAVPSALAVAADPIASLIDTAFIGHLGPVELAAAGVSIALFNQASRITVFPLVSITTSFVAEEDTLEKLNAKAESQNDDDKAKLSEVTPKDIHDVENDGKCSSFKVISDHKSKEKVRKKKRHIASASTALLFGTIVGLLQAAILIFGAKPLLGAMGLKHDSPMLKPAEKYLRLRAYGSPAVLLSLSMQGIFRGFKDTTTPLYVIASGYALNVVLDPILIFLLKLGLEGAAMAHVLAQYLMTFTLLLILAKKVYLLPPTLKDLQIFRFLKNGGLLLARVVAVTFCMTFAASLAARLGPIPMAAFQPCLQVWLTSSLLADGLAVAVQFVAATQPINSLAFVFDGVNYGSSDFAYSAYSLASDHIPLVSFIYHFPMQKCYL. 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09899 418 Coils Coil 99 119 - -
Seca4g09899 418 Pfam MatE 160 257 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca4g09899 418 NCBIfam MATE family efflux transporter 44 368 IPR002528 GO:0015297|GO:0016020|GO:0042910|GO:0055085
Seca4g09899 418 PANTHER PROTEIN DETOXIFICATION 44, CHLOROPLASTIC-RELATED 11 365 IPR044644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09899 Seca-Chr4 231723961 231728903 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09899 K26938 - gmx:100793925 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g03783 4 66552712 66559808 Seca4g09899 4 231723961 231728903 ECH
Seca4g09899 4 231723961 231728903 Seca4g09899 4 231723961 231728903 ECH