Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09898 ATGAAGACGCTAACTATTAATACTGAAGATTCTTTTTCCAGTTTACTGGAACTTGCTTCTAACAATGATATTGAAGGTTTTAAGCTGCTTTTAGATAAGGAAGGTTCTTCAATTAATGAAGTTGGGCTCTGGTATGGTCGGCAAAATGGATCCAAACAAATTGTTCTTGAGCATAGAACTCCTTTGATGGTTGCTGCTACCTATGGTAGTATTGATGTTCTGAAGCTTATACTTTCGCGTCCAGAAGCGGATGTGAATTTCGCATGTGGGGTGAATAAAAGCACTGCCCTTCACTGTGCTGCCTCTGGTGGGTCTGTTAATGCAGTTGATGCTGTGAAGCTTCTTTTGTCTGGTGGTGCTGATCCCAACTGCGTTGATGCCAATGGGAACCGTCCTGTTGATGTCATTGTTGTTCCTCCCAGGCTGCAAGGCATGAAAGCAATTCTTGAGGAACTCCTTTCAGACAGTGCTTCTGATGGCTCTGTTGGTGACTTGTCTGTTCCGGTGTCTGTTAATTCTTCTAGTCCTGGTTCACCTGCCCATTTATCATCACTTGAAAATGGGATGCCATACTCTCCTTCAAGCTCACCGCCTTCTCCTGTGGCTTCAAAGTTTACTGAGAAGAAAGAATATCCAATTGATCCATCACTTCCGGATATAAAAAACAGCATATATGCAACTGATGAATTTCGGATGTTTTCATTCAAGGTCCGCCCTTGTTCCCGGGCATACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCTGGAGAGAATGCTCGGAGGAGAGACCCCAGAAAGTTTCATTACAGCTGTGTGCCATGCCCTGATTTTAGGAAAGGGGCTTGTAGACGTGGAGATATGTGTGAATATGCTCATGGAGTATTTGAGTGCTGGCTACACCCAGCTCAGTATCGAACACGCCTCTGTAAAGATGGCACTAGCTGCAATAGAAGGGTGTGTTTTTTTGCTCACACTGCAGAGGAATTGCGGCCACTATATGTGTCCACTGGATCGGCTGTACCTTCGCCACGGTCATCTGCCTCTGCACCTAATGTCATGGACATGGCTGCTGCAATGAGTCTTTTGCCTGGTTCACCTTCGTCAGTCTCTTCCATGTCTCCATCCCATTTTGCCCAGCCGATGTCCCCATCTGCAAATGGCATCTCACTTTCATCTGCTGCTTGGGCACAGCCTAATGTGCCAGCTCTTCATTTACCAGGAAGCAATCTTCAATCTAGTCGCCTGAGGTCTTCTCTTAGTGCTCGTGACATTCCACCTGAAGACTTGAATGTGTTGTCTGATTTTGATGGTCAGCAGCATATTATGAATGATTTGAGCTGTTTCTTACAGTCCCGTCCTGGTGCCACTTCAGTAGGTCGTTCTTGTCGATCTAAGACACTAACTCCTTCAAATCTGGAAGAGCTCTTTTCTGCTGAAATTTCTTCATCTCCCCGGTATTCTGACCCAGCTGCGGCTTCTGTTTTTTCCCCTACACACAAATCAGCTGTTCTAAATCAGTTTCAGCAGGTTCAAAATATGCTATCACCTATAAATACCAATGTGCTGTCTCCGAAGAGTGTTGAGCATCCTCTGTTACAGGCTTCATTTGGAGTCTCTCCTTCTGGAAGGATGTCACCTAGAAGTGTTGAACCAATCTCCCCAATGAGCTCTCGCATGTCAGCTTTTGCGCAGCGTGAGAAACAGCTGCGGAGTATTAGTTCTAGGGACCTTGGTGCCAACAACCCTGCCTCAGTTGTTGGCTCCCCTGTAAACACTTGGTCTAAGTGGGGATCTCCTAATGCAAAAGTTGATTGGTCAGTAAGTGGAGATGAATTAGGTCGTCAAATGCGAAGATCATCCTCATTTGAACTTAAAAACAACGGGGAAGAGCCTGATCTATCATGGGTCCAATCCCTGGTGAAGGAATCCCCACAGGAGATGGTTAAAGAGAAGTTTGGATCATCTGGCCCTATTGCATCTGCTGATGGACTGAATCCCAATTCCCAAATTGAATCTGTTGATCATTCTGTTTTAGGAGCTTGGCTTGAGCAAATGCAACTGGATCAGCTCGTAGTCTAG 2082 0.4553 MKTLTINTEDSFSSLLELASNNDIEGFKLLLDKEGSSINEVGLWYGRQNGSKQIVLEHRTPLMVAATYGSIDVLKLILSRPEADVNFACGVNKSTALHCAASGGSVNAVDAVKLLLSGGADPNCVDANGNRPVDVIVVPPRLQGMKAILEELLSDSASDGSVGDLSVPVSVNSSSPGSPAHLSSLENGMPYSPSSSPPSPVASKFTEKKEYPIDPSLPDIKNSIYATDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHTAEELRPLYVSTGSAVPSPRSSASAPNVMDMAAAMSLLPGSPSSVSSMSPSHFAQPMSPSANGISLSSAAWAQPNVPALHLPGSNLQSSRLRSSLSARDIPPEDLNVLSDFDGQQHIMNDLSCFLQSRPGATSVGRSCRSKTLTPSNLEELFSAEISSSPRYSDPAAASVFSPTHKSAVLNQFQQVQNMLSPINTNVLSPKSVEHPLLQASFGVSPSGRMSPRSVEPISPMSSRMSAFAQREKQLRSISSRDLGANNPASVVGSPVNTWSKWGSPNAKVDWSVSGDELGRQMRRSSSFELKNNGEEPDLSWVQSLVKESPQEMVKEKFGSSGPIASADGLNPNSQIESVDHSVLGAWLEQMQLDQLVV. 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09898 693 PANTHER UNKEMPT FAMILY MEMBER 17 644 IPR045234 -
Seca4g09898 693 Gene3D - 269 332 - -
Seca4g09898 693 SMART ANK_2a 92 124 IPR002110 GO:0005515
Seca4g09898 693 SMART ANK_2a 57 87 IPR002110 GO:0005515
Seca4g09898 693 SMART ANK_2a 10 40 IPR002110 GO:0005515
Seca4g09898 693 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 274 294 IPR000571 GO:0046872
Seca4g09898 693 Gene3D - 3 186 IPR036770 -
Seca4g09898 693 ProSiteProfiles Ankyrin repeat profile. 92 127 IPR002110 GO:0005515
Seca4g09898 693 Pfam Ankyrin repeats (3 copies) 19 126 IPR002110 GO:0005515
Seca4g09898 693 ProSiteProfiles Zinc finger C3H1-type profile. 274 296 IPR000571 GO:0046872
Seca4g09898 693 MobiDBLite consensus disorder prediction 157 205 - -
Seca4g09898 693 SMART c3hfinal6 304 327 IPR000571 GO:0046872
Seca4g09898 693 SMART c3hfinal6 269 295 IPR000571 GO:0046872
Seca4g09898 693 MobiDBLite consensus disorder prediction 159 202 - -
Seca4g09898 693 FunFam Zinc finger CCCH domain-containing protein 66 227 295 - -
Seca4g09898 693 ProSiteProfiles Ankyrin repeat region circular profile. 92 126 - -
Seca4g09898 693 SUPERFAMILY Ankyrin repeat 9 154 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09898 Seca-Chr4 231704786 231706891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09898 9 690 C2H2 Transcription Factor Family AT5G12850 55.365 0.0 695
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca4g09898 Ank_2 3.3e-11 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09898 - - gmx:100784225 1162.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09898 4 231704786 231706891 Seca4g09898 4 231704786 231706891 ECH