Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09884 ATGCAATGCTTGTGGTTTCTTATGAGTGATAGGATGAAGCCTTTTGCTGGAGGGAAAGATAGTGAACGCGGAGAAAAGAGGCATCGTGATGATGATTTTGACTTATTTGCCATTCCCGAATTATCAAAAGGGTTAAATACAAGAAATTTTGGAAGTAAGAGCAATGAAATAGAAGCTCTTTGTGCTAGAAGATCAAAATCCCTGAAACATGGCACTGTGATGAGTCCCAATTCTTCAGATGCTCATGTAGATGCACCTGTTAGACTTTATGAACAGTCAATACCAACAAAATGGCAAGTAAATCAGTTGTCACAAGGCAATGATGGCCATATTTTGCATGGTATTTCAGCAGTAGCATCACCTATTAATATAGATCATAGATCATATGATGGAGATAGCAGGCACAATCATCTTTATGGGAAGTCTAAGCAGAAAGAACCTGCTGGAAGAATTCCTATGAAAATCTTAATGGCTGGTGTTGGATATACCCCAATTGCTGAGAACGCAAAAGATGAAGGATGTGGTCATGATTATATATCGAAGGATGACATTGGCGAAGTATGTCGTGTTTGTGGAGTTATTAGGATGGGAATTGAATCCATCATCGAATATCCATCCATGAAGGGAAAAAGGAGTTCACGAACTTATGTATCTGAGTCTCGAAATTCAAGTCACAAAGGATCAACCAAGATTTCACAAAGTAGATTTAAATTTTCTAGGGATGAATTAATGCCAACTGGACTTTCTCCTCATCCAAGGCACATGAAGCAAATGAAACTTCATCAGGTGGAGGGATTTAACTTTCTTTGTAGTAACCTCATAACAGATAATCCAGGGGGTTGCATTCTAGCTCATGCTCCAGGTTCTGGAAAGACCTTTATGGTTATAAGTTTTATGCAAAGTTACCTTGCTTCATCACCCGGTGCCAGACCACTAGTTGTTCTACCAAAAGGAATCTTAGCTACATGGAAGAAAGAGTTTCGAACATGGCAAGTGGAGGACATTCCATTATATGATTTTTACTCAGCAAAAGCAGATAGCCGGGCTCAGCAGTTGGAAGTTCTGAAGAAATGGGTGGAGCATAAAAGTATCCTATTTTTGGGCTATCAACAATTTTCTTCCATTATTTGTGACAATGAAAAAGAATCAGCAGTGTCAGAGTGTCAAGAAATACTATTGAGAGTCCCTACAGTGCTTTTTCTAGATGAAGGTCACACTCCAAGAAATGAGGACACTAATGTGCTTCATTCTCTTAAAAAAGTTCACACGCCTCTAAAAGTTTTATTGTCAGGAACTCTTTACCAAAACCATGTGAAAGAGGTGTTTAGTCTTGTGAAGCTTGTTCGACCAAAGTTCATGAGGTTAGAAACTACTTGTGATATACAAAGGCGCATAATGTCCAGAGTGTCAACATCACACACTTCAAAATATGTCCCAGAGGAGGTATTCTTTAACTCGGTGGAGAAGACACTACAAGATAAGGATGATTTCAAACAGAAGGCAGCTGTTGTACGTGATCTTCGTGAGATGACCAGCAAGATTCTTCATTACTATAAAGGTGACTCTCTTGATGACCTCCCTGGTCTTGTTGATTATACCTTGTTACTCAATCTTAGTTTAACACAGAAAAGTGAAGTTGAGAAGTTAAAACAGCTTGAACATTTCAAGAAAGCTTCTGTGGGAAGTCTCTTGTATGTACATCCACAACTGAAATCTTTGTCAGAAGAGTTATCCTCTAATCCGGAGAAGAGGTCCTCCTTTGATGATAAAAAGATGGATGCCATGGTGAAAAGCCTGATCCCAAGAGATGGAGTTAAAGCAAAGTTCTTCCTTAACATGTTGAACCTGTGTGAATCAGCTGGTGAGAAGCTTTTGGTATTTAGTCAGTATATCCTCCCCGTGAAACTCTTTGAGAGAATGTCAGTGCATTCCAAAGGGTGGAGTCGTGATAAAGAATTGTTCATGATAACTGGTGGTTCAAGCCATGAACATAGGGAATGGTCCATGGAACGTTTTAACAACTCTCCTGATGCTAAAGTCTTGTTTGGCTCAATAAAAGCTTGTGGGGAAGGAATTTCTTTAGTAGGGGCTTCACGCATTATCATATTAGATGTTCATCTTAACCCCTCAGTGACTAGACAGGCCATAGGGCGTGCATTTAGACCTGGTCAGAAGAGAAAAGTATACACATATAGGTTGATTGCTGCCGATTCACCTGAGGAGGACGATTATAAGACTTGCTTCAGAAAGGAGTCCATTGCAAAGATGTGGTTTGAGTGGAATGGGAACTTTGGGAACCAACAATTTGAAATGAAGGCCATTGATGTTAATGAATGTGGTGACCCTTTTCTGGAAAGTTTATCCTTGCGGGATGATATAAAGACCTTGTACACGAGGTAA 2400 0.3967 MQCLWFLMSDRMKPFAGGKDSERGEKRHRDDDFDLFAIPELSKGLNTRNFGSKSNEIEALCARRSKSLKHGTVMSPNSSDAHVDAPVRLYEQSIPTKWQVNQLSQGNDGHILHGISAVASPINIDHRSYDGDSRHNHLYGKSKQKEPAGRIPMKILMAGVGYTPIAENAKDEGCGHDYISKDDIGEVCRVCGVIRMGIESIIEYPSMKGKRSSRTYVSESRNSSHKGSTKISQSRFKFSRDELMPTGLSPHPRHMKQMKLHQVEGFNFLCSNLITDNPGGCILAHAPGSGKTFMVISFMQSYLASSPGARPLVVLPKGILATWKKEFRTWQVEDIPLYDFYSAKADSRAQQLEVLKKWVEHKSILFLGYQQFSSIICDNEKESAVSECQEILLRVPTVLFLDEGHTPRNEDTNVLHSLKKVHTPLKVLLSGTLYQNHVKEVFSLVKLVRPKFMRLETTCDIQRRIMSRVSTSHTSKYVPEEVFFNSVEKTLQDKDDFKQKAAVVRDLREMTSKILHYYKGDSLDDLPGLVDYTLLLNLSLTQKSEVEKLKQLEHFKKASVGSLLYVHPQLKSLSEELSSNPEKRSSFDDKKMDAMVKSLIPRDGVKAKFFLNMLNLCESAGEKLLVFSQYILPVKLFERMSVHSKGWSRDKELFMITGGSSHEHREWSMERFNNSPDAKVLFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVYTYRLIAADSPEEDDYKTCFRKESIAKMWFEWNGNFGNQQFEMKAIDVNECGDPFLESLSLRDDIKTLYTR. 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09884 799 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 167 798 IPR044567 GO:0080188
Seca4g09884 799 CDD SF2_C_SNF 606 734 - -
Seca4g09884 799 Gene3D - 527 785 IPR027417 -
Seca4g09884 799 Pfam Helicase conserved C-terminal domain 610 722 IPR001650 -
Seca4g09884 799 Pfam SNF2-related domain 277 545 IPR000330 GO:0005524|GO:0140658
Seca4g09884 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 398 761 IPR027417 -
Seca4g09884 799 Gene3D - 225 492 IPR038718 -
Seca4g09884 799 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 609 777 IPR001650 -
Seca4g09884 799 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 247 453 IPR027417 -
Seca4g09884 799 SMART ultradead3 254 464 IPR014001 -
Seca4g09884 799 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 272 451 IPR014001 -
Seca4g09884 799 SMART helicmild6 640 723 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09884 Seca-Chr4 231527736 231533049 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09884 620 751 RAD5 or RAD16-like Gene Family AT5G43530 34.848 1.72e-14 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g09884 SNF2_N 4.9e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09884 K10875 - qsu:112032205 845.114