Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09883 ATGTCTGATTCATGGAATGCCAAAGAAAAAGCTGATGTATTAGGAATTAAGGTTGCTGAAGACATTCTCATGGTAACTGAAATCTCAGCGCATCCTAGACATATGAAACTAATGAGACCGCACCAAGTCGAAGGATTCAATTTTCTTGTTAGAAATCTGGCGGGTGACGACCCTGGCGGATGCATCTTGGCCCATGCTCCAGGATCTGGGAAAACGTTTATGATTATCAGTTTCATGCAGAGTTTTCTAGGCAAATATCCTGATGCTAGACCTCTAGTGGTGCTTCCTAAGGGAATATTGTCAACTTGGAAAAAGGAGTTTCAAACATGGCAGGTGGAGGACATACCACTGTATGATTTTTACACTGTGAAGGCAGACAGTAGATCTCAGCAACTGACAGTGTTGAAAAAATGGATGGGACACAGGAGTATCCTTTTCTTAGGATACCAACAATTCTCTAAAATTGTTTGTGAGAATGGTACTAACGAGGTTTCAAAGAGTTGTCAAGAGATATTGCTTAAGGTTCCTTCAATTCTTATTTTAGATGAGGGACACAATCCAAGGAATGAAAATACCGATATGGTACAATCCCTTGCGAAAGTACAGACACCCAGAAAAGTTGTACTTTCAGGGACCCTATATCAGAATCATGTCAGGGAGGTATTTAACATCTTAAATCTTGTGCGGCCAAAGTTTTTAAAAATGGAAACATCTAGGCCCATTGTGAAGCGCATTCAAAGTAGAGTACATATATCTGGCGTGAGAACTTTCTACGATTTGGTTGAAAACACTTTGCAGAAGGACACAGATTTTAAAAGGAAGGTGGCTGTTATACAAGATTTGCGTGAAATGACAAGCAAGGTACTTCACTATTACAAAGGAGATTTTCTTGATGAGCTTCCAGGTCTTGTGGATTTTACCGTGCTACTCAAGCTTACCCCGAGACAGAAGCAGGAAGCTGAGAAATTGAAGAAGATACTTAAAAAGTTCAAGGTATCTTCTGTAGGCAGTGCTGTCTATCTTCACCCTAAATTGAAACCCATTGCGGAAAAATGTGATGGTGAAAAATGCATATCTGATAACATGATGGATGATCTAATAGAGAAACTAGATGTGAAAGATGGAGTGAAGACGAAATTCTTTCGCAATATGCTAAACCTGTGCGAATCAGCTGGGGAGAAGCTTCTGGTGTTTAGTCAATATCTCTTGCCTTTGAAATATTTAGAAAGGCTAATTATGAAATGGAAGGGCTGGAGTCTTGGAAAAGAAATTTTTGTAATCTCAGGAGAGTCAAGCTCTGAACAAAGGGAATGGTCCATGGAACGTTTTAACAACTCTCCTGATGCTAAAGTTTTCTTTGGCTCAATTAAAGCTTGTGGTGAAGGAATTTCTTTAGTAGGGGCTTCACGCATTATCATATTAGATGTTCATCTTAACCCCTCAGTAACTAGACAGGCCATAGGCCGTGCATTTCGACCTGGTCAGAAGAGAAAAGTATACACATATAGGTTGATTGCTGCTGATTCACCTGAGGAGGAAGATCATGAGACATGCTTCAGAAAGGAGTCAATTTCAAAAATGTGGTTTGAGTGGAATGAGTATTGTGGTGATCGCGCATTTGAAGTTGAGACAGTCAGTGTGGAAGATTGTGGGGATCAGTTTCTTGAAAGTCCGTTGTTAGGGGAAGATGTTAAAGCTCTGTATAAAAGGTAG 1713 0.4005 MSDSWNAKEKADVLGIKVAEDILMVTEISAHPRHMKLMRPHQVEGFNFLVRNLAGDDPGGCILAHAPGSGKTFMIISFMQSFLGKYPDARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLTVLKKWMGHRSILFLGYQQFSKIVCENGTNEVSKSCQEILLKVPSILILDEGHNPRNENTDMVQSLAKVQTPRKVVLSGTLYQNHVREVFNILNLVRPKFLKMETSRPIVKRIQSRVHISGVRTFYDLVENTLQKDTDFKRKVAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVLLKLTPRQKQEAEKLKKILKKFKVSSVGSAVYLHPKLKPIAEKCDGEKCISDNMMDDLIEKLDVKDGVKTKFFRNMLNLCESAGEKLLVFSQYLLPLKYLERLIMKWKGWSLGKEIFVISGESSSEQREWSMERFNNSPDAKVFFGSIKACGEGISLVGASRIIILDVHLNPSVTRQAIGRAFRPGQKRKVYTYRLIAADSPEEEDHETCFRKESISKMWFEWNEYCGDRAFEVETVSVEDCGDQFLESPLLGEDVKALYKR. 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09883 570 SMART ultradead3 34 248 IPR014001 -
Seca4g09883 570 SMART helicmild6 406 494 IPR001650 -
Seca4g09883 570 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 380 546 IPR001650 -
Seca4g09883 570 Pfam Helicase conserved C-terminal domain 385 493 IPR001650 -
Seca4g09883 570 Pfam SNF2-related domain 57 268 IPR000330 GO:0005524|GO:0140658
Seca4g09883 570 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 52 231 IPR014001 -
Seca4g09883 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 24 253 IPR027417 -
Seca4g09883 570 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 532 IPR027417 -
Seca4g09883 570 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 27 569 IPR044567 GO:0080188
Seca4g09883 570 CDD SF2_C_SNF 368 505 - -
Seca4g09883 570 Gene3D - 7 256 IPR038718 -
Seca4g09883 570 Gene3D - 301 554 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09883 Seca-Chr4 231505841 231508127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09883 277 524 RAD5 or RAD16-like Gene Family AT5G43530 28.346 1.58e-14 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca4g09883 SNF2_N 2.2e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09883 K10875 - gmx:100780454 1000.35