Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09881 ATGCAGGAAGATGTTGTAGTGTTGTACCAAATTGACATGGACACTATAGAAGTCAGTAACCTAAACAGACAATTTTTATTTCGACAATCCCATGTTGGGCAGTCTAAGGCTAAAGTTGCTAGGGATGCTGTGTTGAGATTTAGGCCCCGCATAAACATTACATCATACCATGCAAATGTCAAAGATCCTGACTTCAATGTGGACTTCTTTAAACAATTTAACGTTGTTCTAAATGGACTTGACAATCTAGATGCACGCAGACATGTGAATCGTTTGTGCTTGGCAGCTGATGTTCCTTTGGTTGAAAGTGGAACTACTGGGTTCCTTGGTCAGGTTACTGTACATGTCAAGGGAAGAACGGAGTGCTATGAGTGTCAGCCTAAACCAGCCCCCAAGACATATCCTGTTTGTACCATCACAAGTACCCCATCAAAGTTTGTTCATTGTATTGTGTGGGCAAAGGACCTACTTTTTGCTAAGTTATTTGGGGACAAGAATCAAGATAATGATTTAAATGTTCGCTCAAGTGATGCTGCCAGCTCATCAGAAAATGTAGAGGATGTATTTGAACGTAGGAAAGATGAAGACATTGATCAATATGGAAGGAAGATATTTGATCATGTATTTGGGTATAATATTGAATTAGCTTTGTCTAATGAAGAGACATGGAAAAATCGTAATAGACCAAAACCTATATACAGCAAGGATATCCTGTCTGATGAACTGGCTCGACAGAATGGAGATTTGGACAAAAGTTATGAATCTGATGATGGATTATCAATTTCTGCCATGGCATCTTTGGGCATGAAGAACCCACAGGATATCTGGAGTCTTAAAGAAAATTCTAGGATATTTCTTGAAGCATTGAGACTATTTTTCACGAAAAGGGAAAAGGAGATTGGCAACCTGAGCTTTGATAAAGATGACCAGTTGGCTGTAGAATTTGTTACTGCAGCTGCAAACATACGGGCTGCTTCATTTGGCATCCCTCTGCAAAGCCTTTTTGAAGCTAAAGGAATTGCTGGTAATATTGTCCATGCTGTTGCGACAACAAATGCTGTTATTGCTGGGTTGATTGTCATTGAAGCAATTAAAGTGCTGAAAAATGACACAAAAAATTATAGAATGACATATTGTCTGGAACATCTATCAAGAAGAATGCTGCTTATGCCGGTTGAACCATTTGAACCTAACAAATCTTGTTATGTTTGTTCTGAGACTCCTTTATTGCTTGAAATAAACACAAACCTTTCAAAGTTAAAGGACTTTGTTGAAAAGATTGTCAAGGCAAAGCTTGGGATGAATCTTCCACTTATTATGAATGCTTCAAACCTCCTTTATGAAGCTGGTGATGTTGAGGATGACATGGTTGCAATTTATACGGCCAACCTTGAAAAGGTAGGTTTCTTGTCTTTGGTTTGA 1422 0.3854 MQEDVVVLYQIDMDTIEVSNLNRQFLFRQSHVGQSKAKVARDAVLRFRPRINITSYHANVKDPDFNVDFFKQFNVVLNGLDNLDARRHVNRLCLAADVPLVESGTTGFLGQVTVHVKGRTECYECQPKPAPKTYPVCTITSTPSKFVHCIVWAKDLLFAKLFGDKNQDNDLNVRSSDAASSSENVEDVFERRKDEDIDQYGRKIFDHVFGYNIELALSNEETWKNRNRPKPIYSKDILSDELARQNGDLDKSYESDDGLSISAMASLGMKNPQDIWSLKENSRIFLEALRLFFTKREKEIGNLSFDKDDQLAVEFVTAAANIRAASFGIPLQSLFEAKGIAGNIVHAVATTNAVIAGLIVIEAIKVLKNDTKNYRMTYCLEHLSRRMLLMPVEPFEPNKSCYVCSETPLLLEINTNLSKLKDFVEKIVKAKLGMNLPLIMNASNLLYEAGDVEDDMVAIYTANLEKVGFLSLV. 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09881 473 Gene3D - 405 471 - -
Seca4g09881 473 SUPERFAMILY Activating enzymes of the ubiquitin-like proteins 11 450 IPR035985 GO:0008641
Seca4g09881 473 Gene3D - 5 77 IPR042449 -
Seca4g09881 473 Pfam Ubiquitin-activating enzyme, SCCH domain 290 338 IPR019572 -
Seca4g09881 473 FunFam SUMO-activating enzyme subunit 2 3 77 - -
Seca4g09881 473 Gene3D Ubiquitin activating enzymes (Uba3). Chain: B, domain 2 132 343 IPR023318 -
Seca4g09881 473 FunFam SUMO-activating enzyme subunit 132 343 - -
Seca4g09881 473 PIRSF SUMO_E1B 3 470 IPR030661 GO:0016925|GO:0019948
Seca4g09881 473 PANTHER UBIQUITIN-ACTIVATING ENZYME E1 8 454 IPR045886 -
Seca4g09881 473 FunFam SUMO-activating enzyme subunit 346 379 - -
Seca4g09881 473 Pfam ThiF family 11 402 IPR000594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09881 Seca-Chr4 231479676 231486622 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09881 303 394 EF-hand Containing Proteins AT2G30110 34.375 9.00e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09881 K10685 - gmx:100779926 855.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09881 4 231479676 231486622 Seca4g09881 4 231479676 231486622 ECH