Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09877 ATGGGTGCTGCTTGTTGCGTTGCAACCAGAGATAGAACTATACAAAGTGGATCAACTAGTGAAATCTTGCATCGGAATATACGGTATTCTCCAACATGGAGCTTCCGGTGGGATCATCGAGGCCGTGTAGCTGGTGAAGATACTTCTATAAATTGGTTTTCTGATGGTAATAGCAGGAGTGACAGATTGGAGAATAAAAATGAATCATCATATGTATCAGAGGATGGAAGCCCGTTGCAGAATTATCAAAGGAATAAATGGCAAAAATCCCCAATCTCTGAAGTAACTGCTGGACACATGATAAATTCTTCATCTGATCAATCTATTTCAAGAAATGTTTCCATAGATGTGAGCATGGAACAGGTGAAGGAGTTGGCAGAACCATCAGCAGTATCATGTCCATCTCTTAGAACATCTTCACGCTCATTGCCTTCTACTTCATTGTCAGTGTCTCCTATGCCATCCCAAAGTCACCTACCTCCATCCAGCTCAACACCATTAAGGTGGCCCTGCCCTTCCTCAGGACACCAACTATTTCGGCAAGTTTCTGATAGCCGAATCCTGGGATTAAAGTCACCTAGCAACTTATTTGTACCTGAAGAAAGGCCAGTGTTTCCTTCATTTAGCAATGAAAATGGTATGCGCTCCTGTGGTGGATCTTCAGATAATTGGTCAAGGCCTGGCTTTTCTGAACTGACGGGAACTTCCCATATGGAAAGATATTCATTTGATAGTGAGTCATTTGGTTTTAATTGTGAAAGGTTGGTTAGATCCAGTAGTCGGTTTTCAACTTCTCCAGTTGATTTGCAAACATGTGGTGTTTGCTCGAAACTTTTAACTGAAAAGTCTTCTTGGAGCGCCCAAAAGATTATTGCAAGTAATGACCTTTCTGTAGTTTCTGTTCTTATATGTGGACATGTCTATCACGCTGAATGTTTGGAGAGCATGACACCTGAAATCAACAAGTATGATCCAGCTTGCCCAATTTGCACTTTTGGTGAAAAACAAACTCTTAAGTTGTCTGAAAAGGCTCTGAAAGCTGAAATGGATTTGAAGGCTAGAAATAAGAAATCAAGGAACCGAATTGTGGACAGTGATATTGATGATGATTCTATTGTATTTGATCACTTTAGAGATAGAGGGCGTCAAAGTAAAGGTCCTAGAATGGACTCTAGTTCCAGTGGGAGAAGCTCTACTGGAAAACCTTTTCTGAGGAAACACTTCTCATTTGGCTCAAAGAGTTCCAAATGCATGTTAGATAACCCAACACGAAAGAAGGGCTTCTTTTGGGCAAAGTCTAGCAAGGAATAA 1311 0.4096 MGAACCVATRDRTIQSGSTSEILHRNIRYSPTWSFRWDHRGRVAGEDTSINWFSDGNSRSDRLENKNESSYVSEDGSPLQNYQRNKWQKSPISEVTAGHMINSSSDQSISRNVSIDVSMEQVKELAEPSAVSCPSLRTSSRSLPSTSLSVSPMPSQSHLPPSSSTPLRWPCPSSGHQLFRQVSDSRILGLKSPSNLFVPEERPVFPSFSNENGMRSCGGSSDNWSRPGFSELTGTSHMERYSFDSESFGFNCERLVRSSSRFSTSPVDLQTCGVCSKLLTEKSSWSAQKIIASNDLSVVSVLICGHVYHAECLESMTPEINKYDPACPICTFGEKQTLKLSEKALKAEMDLKARNKKSRNRIVDSDIDDDSIVFDHFRDRGRQSKGPRMDSSSSGRSSTGKPFLRKHFSFGSKSSKCMLDNPTRKKGFFWAKSSKE. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09877 436 PANTHER EXPRESSED PROTEIN 1 336 - -
Seca4g09877 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 332 IPR013083 -
Seca4g09877 436 SUPERFAMILY RING/U-box 271 331 - -
Seca4g09877 436 MobiDBLite consensus disorder prediction 128 170 - -
Seca4g09877 436 MobiDBLite consensus disorder prediction 378 407 - -
Seca4g09877 436 SMART ring_2 272 330 IPR001841 -
Seca4g09877 436 MobiDBLite consensus disorder prediction 132 170 - -
Seca4g09877 436 MobiDBLite consensus disorder prediction 70 86 - -
Seca4g09877 436 ProSiteProfiles Zinc finger RING-type profile. 272 331 IPR001841 -
Seca4g09877 436 MobiDBLite consensus disorder prediction 53 86 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09877 Seca-Chr4 231442159 231448278 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09877 - - gmx:106795502 656.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09877 4 231442159 231448278 Seca4g09877 4 231442159 231448278 ECH