Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09875 ATGGTGAAGGATACTGCCTACTACGACATATTAGGTGTCAATGTTGACGCATCTGCTGCAGATATAAAAAAGGCTTATTATATCAAGGCAAGAATAGTTCACCCTGATAAAAATCCTGGGGATCCTAAGGCTGCAGAAAATTTTCAGATACTTGGTGAGGCTTACCAGGTTTTAAGTGATCCTGAGAAGCGTGAAGCATATGATAAGCATGGAAAGGCTGGAGTATCACCAGATTCCATGATGGATCCTACAACTGTATTTGGAATGCTTTTTGGAAGTGAATTCTTTGAAGAATATATTGGAAAACTTGCACTAGCTTCTTTAGCATCTATTGAAATTGAGGATGACATACAGGATCCCGAAGTTCAAAGGCAGAGAATTCAAGAAAAGATGAAAGAATGGCAGAAGGAAAGGGAACAGAAGCTGATATCAATTCTGAACGATCGTCTGCAACCGTTTGTTGATGGTAGAGAAGATGAATTTACAGCATGGGCAAATTCAGAAGCACGTCAGCTTTCAAGAGCTGTTGTTAACTCGTTACTGACATTGTTTTCAGCTTTTGGAGAGGCCATGCTACATACAATTGGTTATATTTACACACGAAAAGCAGCAAGAGAACTTGGAAAGGATATGCGGTATATGAATGTTCCCTTTCTGGCAGAGTGGGTACGAGATAAAGGACACCGTATAAAGTCACAAGTGACGGCAGCCTCAGGAGCTGTGTCCCTGATTCAAATACAAGAAGAGCTCAAGAAGCTAAACCAAGGAGAAAACAAAGAAGAAAACATGGTGAAAGCTATTGAAGATAAGAAGGATGCCATGATTAATTCCCTTTGGCAGATCAATGTGATTGACATTGAATCAACTCTGTCACATGTCTGCCAAGCAGTTCTTAAAGATCCTAGTGTCTCCAAAGATGTTCTGAGGTCTCGGGCCAAAGCATTGAAGAAGTTAGGAACTATCTTTCAAGGTGCTAAAACTGCTTACAGCAGAGAAAACAGTCTACGCCGAGAAGGTGACAAACAGGTAGATGCTGCTTCCTCATCATAG 1050 0.4086 MVKDTAYYDILGVNVDASAADIKKAYYIKARIVHPDKNPGDPKAAENFQILGEAYQVLSDPEKREAYDKHGKAGVSPDSMMDPTTVFGMLFGSEFFEEYIGKLALASLASIEIEDDIQDPEVQRQRIQEKMKEWQKEREQKLISILNDRLQPFVDGREDEFTAWANSEARQLSRAVVNSLLTLFSAFGEAMLHTIGYIYTRKAARELGKDMRYMNVPFLAEWVRDKGHRIKSQVTAASGAVSLIQIQEELKKLNQGENKEENMVKAIEDKKDAMINSLWQINVIDIESTLSHVCQAVLKDPSVSKDVLRSRAKALKKLGTIFQGAKTAYSRENSLRREGDKQVDAASSS. 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09875 349 Pfam X-domain of DnaJ-containing 135 335 IPR026894 -
Seca4g09875 349 SUPERFAMILY Chaperone J-domain 2 100 IPR036869 -
Seca4g09875 349 Coils Coil 243 270 - -
Seca4g09875 349 CDD DnaJ 7 60 IPR001623 -
Seca4g09875 349 SMART dnaj_3 5 63 IPR001623 -
Seca4g09875 349 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Seca4g09875 349 Coils Coil 124 144 - -
Seca4g09875 349 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 2 340 - -
Seca4g09875 349 Gene3D DnaJ domain 3 103 IPR036869 -
Seca4g09875 349 PRINTS DnaJ domain signature 26 41 IPR001623 -
Seca4g09875 349 PRINTS DnaJ domain signature 63 82 IPR001623 -
Seca4g09875 349 PRINTS DnaJ domain signature 8 26 IPR001623 -
Seca4g09875 349 PRINTS DnaJ domain signature 43 63 IPR001623 -
Seca4g09875 349 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Seca4g09875 349 Pfam DnaJ domain 7 68 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09875 Seca-Chr4 231390544 231405134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09875 7 69 Miscellaneous Gene Families AT1G16680 49.231 2.20e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09875 - - gmx:100787075 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09875 4 231390544 231405134 Seca4g09875 4 231390544 231405134 ECH