Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09868 ATGGCACTCAATCAAGAGTTAGAAGCTGTAACCCAAGCTTTCTCAGGGCATGGGGTGGATGAGAAATCATTGATAACATTACTGGGAAAATGGGATCCTCTTGAGAGAGAATCTTTCAGGAAGAAGACACCACAGTTCTTCATTCAGGATCATGAACGCCATTTTCAGAGGTGGGATGACCACTCTGTCCGTCTTCTCAAGCATGAGTTCGTGCGTTTTAAGAATGCTGTGGTGCTTTGGAGCATGCACCCTTGGGAAAGGGATGCCCGTTTAGCAAAAGAGGCCCTTAAGAAGGGGCCAAAGGCATATGGAGTCCTGATTGAGATTGCATGCACTAGATCCTCGGAAGAGTTACTTGGAGCTAGGAAGGCCTACCATTCCCTCTTTGACCACTCCATTGAAGAAGATGTTGCCTCTCACATCCATGGAATTGAAAGAATGCTCTTGGTTGCACTTGTGAGTGCCTATAGATATGAAGGATCAAAGGTTAAAGATGACACTGCAAAATCAGAGGCCAAAACACTTTCCAATGCCATTAAGAATGCTCATAAGAAGCCTATTATTGAGGATGATGAAGTAATAAGGATATTGGCAACAAGAAGCAAGCCACATCTTCAGGCAATTTACAAGCACTATAAAGAGATATCTGGCAAGAACCTTGATGAGGATATTGATGATTTCAGATTCAAAGAGACTGTGCAATGCCTTTGCACCCCGCAAACATATTTTAGTAAGGTTTTGAACACAGCATTGAGAATTGATGTGGATAAGAGTACAAAGAAAGCTCTTACTCGTGTGATTGTTACTCGAGCTGACATTGATATGAAGGAGATAAAAGCTGAGTACCATAACTTATATGGAGTTTCTTTACCCCAGAAAATTGAAGAGACAGCTAAAGGGAACTACAAGGATTTCTTGCTAACCTTGATTGCTAGAGGAGGCTAA 945 0.4212 MALNQELEAVTQAFSGHGVDEKSLITLLGKWDPLERESFRKKTPQFFIQDHERHFQRWDDHSVRLLKHEFVRFKNAVVLWSMHPWERDARLAKEALKKGPKAYGVLIEIACTRSSEELLGARKAYHSLFDHSIEEDVASHIHGIERMLLVALVSAYRYEGSKVKDDTAKSEAKTLSNAIKNAHKKPIIEDDEVIRILATRSKPHLQAIYKHYKEISGKNLDEDIDDFRFKETVQCLCTPQTYFSKVLNTALRIDVDKSTKKALTRVIVTRADIDMKEIKAEYHNLYGVSLPQKIEETAKGNYKDFLLTLIARGG. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09868 314 SMART annex3 189 236 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 SMART annex3 257 309 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 SMART annex3 100 152 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 PRINTS Annexin family signature 178 204 IPR001464 GO:0005509|GO:0005544
Seca4g09868 314 PRINTS Annexin family signature 15 37 IPR001464 GO:0005509|GO:0005544
Seca4g09868 314 PRINTS Annexin family signature 253 273 IPR001464 GO:0005509|GO:0005544
Seca4g09868 314 PRINTS Annexin family signature 297 310 IPR001464 GO:0005509|GO:0005544
Seca4g09868 314 ProSiteProfiles Annexin repeat profile. 83 154 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 FunFam annexin D4 153 240 - -
Seca4g09868 314 Pfam Annexin 178 226 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 Pfam Annexin 87 152 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 Pfam Annexin 259 309 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 PANTHER ANNEXIN 5 309 - -
Seca4g09868 314 FunFam annexin D4 241 311 - -
Seca4g09868 314 Gene3D Annexin 150 241 IPR037104 GO:0005509|GO:0005544
Seca4g09868 314 ProSiteProfiles Annexin repeat profile. 166 252 IPR018502 GO:0005509|GO:0005544
Seca4g09868 314 Gene3D Annexin 242 311 IPR037104 GO:0005509|GO:0005544
Seca4g09868 314 FunFam Annexin 83 152 - -
Seca4g09868 314 SUPERFAMILY Annexin 5 311 IPR037104 GO:0005509|GO:0005544
Seca4g09868 314 Gene3D Annexin 83 149 IPR037104 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09868 Seca-Chr4 231284460 231287450 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09868 K17098 - gmx:100796623 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09868 4 231284460 231287450 Seca4g09868 4 231284460 231287450 ECH