Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09867 ATGGCTACTCTAATTGTTCAAGGTTCACCTTCCCCTGTTGAAGATGCTGAGGCTCTCCACAAATCCTTCCAAGGATGGGGGACTGATGAGAACACTGTGGTAACAATACTGGGTCATAGAAATGTTCATCAGAGGCAACAAATCAGAAGAGCTTATGAGGAGATTTACCAAGAGGATCTTGTCAAACGCATGGAGTCTGAGCTCAAAGGAGACTTTGAGAAAGCTGTGTACCGGTGGATACTGGAACCTGCAGATCGTGATGCTGTTTTGATCAATGTTGTAATCAAAAGTGGTAAAAACTTTCATGTCATTGTGGAAATTTCCTCTGTTCTCTCCCCTGAAGAGCTTTTTGCTGTGAGGCGTGCTTACCTTCACCGCTACAAGCGCTCTGTGGAAGAAGATGTTGCTGCTCATACCTCTGGCCATCTCCGACAGCTTTTATTGGGGCTTGTGACCTCATTTAGGTATGTTGGTGATGAGATCAATGCTAAATTAGCACAAACTGAAGCTGAAATTCTTCATGAGGCTGTGAAAGAGAAGAAAGGTAGCCATGAAGAAGCCATCAGGATCTTGACTACAAGGAGCAAGACCCAACTCGTTGCAACTTTCAACCGCTACAGAGAGGTCCATGGCACTTCCATCACTAAGCAACTGTTGGATGAAAAATCTGATGACTTTCAGACAGCATTGTACACTGCCATTCGTTGCTTCAATGATCACATTAAGTATTATGAAAAGGTGGTGCGCAATGCAATAAAAAAGGTTGGAACAGATGAGGATGCACTGACCCGTGTGATAGTGAGCAGAGCAGAGAAGGATCTGAAGATCATCTCAGAAGTTTATTACAAGAGAAACAGTGTTCATCTTGAGCAAGCTGTGGCAAAAGAAACCTCAGGGGACTACAAGAAGTTCCTTCTCACTCTCTTGGGGAAAGAAGATTAA 942 0.4374 MATLIVQGSPSPVEDAEALHKSFQGWGTDENTVVTILGHRNVHQRQQIRRAYEEIYQEDLVKRMESELKGDFEKAVYRWILEPADRDAVLINVVIKSGKNFHVIVEISSVLSPEELFAVRRAYLHRYKRSVEEDVAAHTSGHLRQLLLGLVTSFRYVGDEINAKLAQTEAEILHEAVKEKKGSHEEAIRILTTRSKTQLVATFNRYREVHGTSITKQLLDEKSDDFQTALYTAIRCFNDHIKYYEKVVRNAIKKVGTDEDALTRVIVSRAEKDLKIISEVYYKRNSVHLEQAVAKETSGDYKKFLLTLLGKED. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09867 313 ProSiteProfiles Annexin repeat profile. 10 81 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 SMART annex3 256 308 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 SMART annex3 182 233 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 SMART annex3 98 150 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 SMART annex3 27 79 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 PANTHER ANNEXIN 12 308 - -
Seca4g09867 313 FunFam Annexin 240 311 - -
Seca4g09867 313 Gene3D Annexin 1 81 IPR037104 GO:0005509|GO:0005544
Seca4g09867 313 Gene3D Annexin 241 313 IPR037104 GO:0005509|GO:0005544
Seca4g09867 313 ProSitePatterns Annexin repeat signature. 256 308 IPR018252 GO:0005509|GO:0005544
Seca4g09867 313 ProSiteProfiles Annexin repeat profile. 239 310 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 FunFam Annexin 1 81 - -
Seca4g09867 313 SUPERFAMILY Annexin 9 313 IPR037104 GO:0005509|GO:0005544
Seca4g09867 313 Gene3D Annexin 164 237 IPR037104 GO:0005509|GO:0005544
Seca4g09867 313 ProSiteProfiles Annexin repeat profile. 164 235 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 FunFam Annexin 164 238 - -
Seca4g09867 313 PRINTS Plant annexin signature 159 179 IPR009118 -
Seca4g09867 313 PRINTS Plant annexin signature 224 242 IPR009118 -
Seca4g09867 313 PRINTS Plant annexin signature 117 131 IPR009118 -
Seca4g09867 313 ProSiteProfiles Annexin repeat profile. 82 152 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 PRINTS Annexin family signature 64 80 IPR001464 GO:0005509|GO:0005544
Seca4g09867 313 PRINTS Annexin family signature 252 272 IPR001464 GO:0005509|GO:0005544
Seca4g09867 313 PRINTS Annexin family signature 296 309 IPR001464 GO:0005509|GO:0005544
Seca4g09867 313 PRINTS Annexin family signature 24 46 IPR001464 GO:0005509|GO:0005544
Seca4g09867 313 FunFam Annexin 82 151 - -
Seca4g09867 313 Pfam Annexin 96 150 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 Pfam Annexin 15 76 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 Pfam Annexin 169 230 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 Pfam Annexin 247 308 IPR018502 GO:0005509|GO:0005544
Seca4g09867 313 Gene3D Annexin 82 152 IPR037104 GO:0005509|GO:0005544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09867 Seca-Chr4 231277318 231281289 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09867 K17098 - gmx:100796092 515.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g09867 4 231277318 231281289 Seca4g09867 4 231277318 231281289 ECH
Seca4g09867 4 231277318 231281289 Seca4g07339 4 164382586 164386628 PCT