Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09861 ATGACACATTACACATTTCTTTTGCTTACCCTTTGTTGCATAATTTCCCTCACCCATGCTCAAAACAATGGCTTCAGTGTTGAACTCATCCACCGTGACTCTTCAAAATCACCACTTTACCATTCCACACAAACCCATTTCCAAAGAGTTGCTAATGCTGTGCGTCGTTCCATCAACCGTGCCAATCATTTCAACAAAGCTTCTATCCCTTCAAGCTCTGCTGAATCAAATGTGACACCAGATAGAGGTGAATACCTCATGAGCTATTCAATTGGTACCCCACCTTTTCAACTCTTTGGTATTGTTGACACTGGTAGTGATATTGTTTGGCTTCAATGCAAGCCTTGTGAAACTTGTTACAACCAAACCTCTCCAATGTTTGATCCTTCAAAATCCACAACATACAGAACCACTTCTTGCTCTTCTACTTTATGTAAATCAGTTAGAGATACCTCTTGTTCTACTGATGGTAAAGAAACTTGTGAATATACCATAAATTATGGGGATAATTCACACTCACAAGGAGATCTTAGTGTGGATACTCTCACTTTGGGTTCCACTAGAGGCTCTATTGTATCATTTCCTAAAACTGTTATAGGATGTGGACACATGAATACTGTGTCATTTCAGGGGCAAAGCTCTGGCATAGTTGGTCTTGGAGGTGGACCTGTGTCTCTCATAACTCAATTGAGTTATGCAATTAATGGAAAATTCTCCTATTGTTTGGTGCCAATGTTTTCAGAATCTAACACATCAAGCAAACTCAGTTTTGGAGATGATGCTGTGGTTTCAGGACAGGGGAGTGTTTCAACTCCTATAGTCCCAAGTACTGAAAAAGTCTTTTACTTTCTAACATTGGAAGGGTTTAGTGTTGGAGGGAACAGAATTGAGTTTGGAACAGAGGGAAATATCATTATTGACTCAGGTACAACATTGACACTTTTGCCAGATGATGTTTACTCTCAATTGGAATCAGCAGTGGCAAAAGAGGTTAAATTGGAGCGTGTTGATGATCCTAGTCAACAATTGAGCCTTTGCTACAAAATATCAGGAACAGGAGAATTAGAGGTTCCTGTTATCATTGCACATTTTGATGGTGCAGATGTCACATTGAATGCTCTTAATACCTTTGTTCAAGTTGATGATGGGATTGTGTGTTTGGCTTTTGCACCAAGTCAAAGTATTGCAATCTTTGGAAACTTGGCACAGCAGAATTTGTTGGTTGGATATGATCTGCTAAAGAAAACTGTCACCTTTAAGCCTACAGATTGCACCAAGCACTGA 1284 0.3956 MTHYTFLLLTLCCIISLTHAQNNGFSVELIHRDSSKSPLYHSTQTHFQRVANAVRRSINRANHFNKASIPSSSAESNVTPDRGEYLMSYSIGTPPFQLFGIVDTGSDIVWLQCKPCETCYNQTSPMFDPSKSTTYRTTSCSSTLCKSVRDTSCSTDGKETCEYTINYGDNSHSQGDLSVDTLTLGSTRGSIVSFPKTVIGCGHMNTVSFQGQSSGIVGLGGGPVSLITQLSYAINGKFSYCLVPMFSESNTSSKLSFGDDAVVSGQGSVSTPIVPSTEKVFYFLTLEGFSVGGNRIEFGTEGNIIIDSGTTLTLLPDDVYSQLESAVAKEVKLERVDDPSQQLSLCYKISGTGELEVPVIIAHFDGADVTLNALNTFVQVDDGIVCLAFAPSQSIAIFGNLAQQNLLVGYDLLKKTVTFKPTDCTKH. 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09861 427 Gene3D Acid Proteases 264 427 IPR021109 -
Seca4g09861 427 CDD pepsin_A_like_plant 84 424 IPR034161 -
Seca4g09861 427 PANTHER OS07G0603500 PROTEIN-RELATED 27 425 - -
Seca4g09861 427 Gene3D Acid Proteases 60 259 IPR021109 -
Seca4g09861 427 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 304 315 IPR001969 GO:0004190|GO:0006508
Seca4g09861 427 Pfam Xylanase inhibitor C-terminal 282 420 IPR032799 -
Seca4g09861 427 Pfam Xylanase inhibitor N-terminal 85 259 IPR032861 -
Seca4g09861 427 ProSiteProfiles Peptidase family A1 domain profile. 85 420 IPR033121 -
Seca4g09861 427 FunFam Probable aspartic protease At2g35615 64 258 - -
Seca4g09861 427 FunFam Aspartic proteinase CDR1 260 427 - -
Seca4g09861 427 SUPERFAMILY Acid proteases 81 424 IPR021109 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09861 Seca-Chr4 231138457 231139761 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09861 77 426 Miscellaneous Gene Families AT1G77480 27.394 8.94e-23 98.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09861 - - gmx:100789696 568.926