LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g09858	ATGTCTATCCAGAATGAAAATTCTGATACAAAAGATGTATCAGGTCCACAAAAAAGGCTAACAAATCTGATGCATCATGCTGGAAACAAGTTTTGCGCTGATTGTGGAACTCCAGAGCCAAAATGGGTATCTTCAAGTCTTGGAGTATTTATTTGCATCAAGTGTTCTGGCGTACATAGAAGTCTAGGAGTCCATATATCAAAGGTTGTATCAGTGAAGCTAGATGAATGGACAGATGAACAAGTTGATTCATTAGAGAAGTTGGGTGGAAATACATTGTTAAATAAGAAGTATGAAGCTTGCCTCCCAAGTAATATAAAAAAACCAAAACCACATTCTTCCATTGAGGAGCGCTCCGATTATATCAGGAAAAAATATGAGCTGCTACAGTTCATTGAGTGTGATGACAATTTGTCATACCAAATAGTACCATCCCAAGGAAGAAGTTCATCATTGGCTCATATCAATTCTGCATGCTACAATTCCTTTATGGACAAGAAACTATTTGAGAAGCACCCAACCAAACATCGTATTGGGCATGCATTCAGAAACAGCTGGGGAAGAAAAGATTCTGAGCACAAGTCTTCAAAGAAGAGCACCTCATTGGCAGGTATGGTTGAATTTGTTGGGTTGATTAAGGTTAATGTTGTAAAAGGCACTCACCTGGCAGTTCGAGATGTAATGACCAGTGACCCTTATGTCATCCTTTCTTTGGGTCACCAATCAGTAAAAACACGTGTTATAAAGAACAATTTAAATCCAGTCTGGAATGAAAGCCTAATGCTGTCAATTCCAGAGAACATTCCTCCTCTTAAAGTGCTTGTGTATGATAAGGATACATTTTCAACTGATGATTTTATGGGTGAGGCTGAAATAGACATTCAACCTCTAGTTTTAGCTGCAATTGCCTATGAGAAATCTACAATCAATGAGTCCATGCAGCTTGGGAAATTTGTAGCAAGCAAGGACAACACTCTTGTAAGAGATGGTATCATCTCCCTTGATGATGGGAAGATCAAACAGGAAATCTCAGTGAGGCTACAAAATGTTGAGAGAGGTGTGCTGGAGATTGAGCTTGAGTGTGTTCCTCTTACTCAATAG	1101	0.3896	MSIQNENSDTKDVSGPQKRLTNLMHHAGNKFCADCGTPEPKWVSSSLGVFICIKCSGVHRSLGVHISKVVSVKLDEWTDEQVDSLEKLGGNTLLNKKYEACLPSNIKKPKPHSSIEERSDYIRKKYELLQFIECDDNLSYQIVPSQGRSSSLAHINSACYNSFMDKKLFEKHPTKHRIGHAFRNSWGRKDSEHKSSKKSTSLAGMVEFVGLIKVNVVKGTHLAVRDVMTSDPYVILSLGHQSVKTRVIKNNLNPVWNESLMLSIPENIPPLKVLVYDKDTFSTDDFMGEAEIDIQPLVLAAIAYEKSTINESMQLGKFVASKDNTLVRDGIISLDDGKIKQEISVRLQNVERGVLEIELECVPLTQ.	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g09858	366	CDD	ArfGap	20	126	-	-
	Seca4g09858	366	PANTHER	ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD12	10	366	IPR044518	GO:0005096\|GO:0005543
	Seca4g09858	366	Gene3D	Arf GTPase activating protein	2	140	IPR038508	-
	Seca4g09858	366	SUPERFAMILY	ArfGap/RecO-like zinc finger	17	132	IPR037278	-
	Seca4g09858	366	SMART	arf_gap_3	17	139	IPR001164	GO:0005096
	Seca4g09858	366	CDD	C2_ArfGAP	209	353	-	-
	Seca4g09858	366	ProSiteProfiles	ARF GTPase-activating proteins domain profile.	17	139	IPR001164	GO:0005096
	Seca4g09858	366	Pfam	Putative GTPase activating protein for Arf	18	133	IPR001164	GO:0005096
	Seca4g09858	366	FunFam	stromal membrane-associated protein 1 isoform X1	2	137	-	-
	Seca4g09858	366	Gene3D	C2 domain	208	365	IPR035892	-
	Seca4g09858	366	SMART	C2_3c	211	306	IPR000008	-
	Seca4g09858	366	FunFam	ADP-ribosylation factor GTPase-activating protein AGD12	208	366	-	-
	Seca4g09858	366	Pfam	C2 domain	211	297	IPR000008	-
	Seca4g09858	366	PRINTS	HIV Rev interacting protein signature	48	65	IPR001164	GO:0005096
	Seca4g09858	366	PRINTS	HIV Rev interacting protein signature	29	48	IPR001164	GO:0005096
	Seca4g09858	366	PRINTS	HIV Rev interacting protein signature	69	90	IPR001164	GO:0005096
	Seca4g09858	366	SUPERFAMILY	C2 domain (Calcium/lipid-binding domain, CaLB)	207	301	IPR035892	-
	Seca4g09858	366	ProSiteProfiles	C2 domain profile.	193	308	IPR000008	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g09858	Seca-Chr4	231107084	231112046	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g09858	17	366	C2H2 Transcription Factor Family	AT4G05330	48.000	1.56e-118	345

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g09858	K12486		-	gmx:100789552	642.884