Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09853 ATGGGTATGGCTGCAGAGACCCAGTTCCATGTTTTGGCTGTTGATGACAGTCTTATTGACAGAATGTTGATTGAGAGGCTCCTAAAAACCTCTTCCTTTCATGTTACTGCAGTGGACTCTGCCAGTAAGGCCTTAAAATTTCTTGGTTTGGTTGAAGATGAGTTGAGGACTTTTGACACTCATGTTGTTGCTTCAGAAATTCATCAGTCTTTGCCTCAATTATTCATGCAGGATGTAGATGTAAACCTGATCATAACAGATTATTGTATGCCAGAAATGACTGGCTATGATCTGTTGAGAAAAATCAAGGAATGTAAATCTCTTAAAGACATACCAGTTGTGATTATGTCCTCAGAGAATGTTCCATCAAGGATCAACAGATGCTTGGAAGAGGGAGCTGAAGAATTCTTCCTGAAACCAGTTCAACAGTCAGATGTAAACAAGCTCAAGCCCCATTTGTTGAAATCAAGGGTCAAGGAAGAGCAAGACCAACCCATCAATAACAAAAGGAAGGGCATGGAAGAAAGCCACTCCCCAGATAAAACCAGATTAAAATGCAGTATTTAA 567 0.4004 MGMAAETQFHVLAVDDSLIDRMLIERLLKTSSFHVTAVDSASKALKFLGLVEDELRTFDTHVVASEIHQSLPQLFMQDVDVNLIITDYCMPEMTGYDLLRKIKECKSLKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVQQSDVNKLKPHLLKSRVKEEQDQPINNKRKGMEESHSPDKTRLKCSI. 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09853 188 ProSiteProfiles Response regulatory domain profile. 10 154 IPR001789 GO:0000160
Seca4g09853 188 Pfam Response regulator receiver domain 11 146 IPR001789 GO:0000160
Seca4g09853 188 Gene3D - 10 184 - -
Seca4g09853 188 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 171 IPR045279 GO:0009736
Seca4g09853 188 SUPERFAMILY CheY-like 8 156 IPR011006 -
Seca4g09853 188 CDD REC_typeA_ARR 11 149 - -
Seca4g09853 188 SMART REC_2 9 153 IPR001789 GO:0000160
Seca4g09853 188 MobiDBLite consensus disorder prediction 157 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09853 Seca-Chr4 231042685 231044372 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09853 1 183 Response Regulator Gene Family AT3G57040 50.216 4.37e-69 208
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca4g09853 Response_reg 2.1e-16 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09853 K14492 - gmx:100787436 303.138