Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09846 ATGATCAGGATAAGTGAAGATGAGTTCAAGATGTACCACTTTATCAGTCGGTTAGTTGCATTTGAGTTTTATAATAAGTATGCTCAGAAAAGAGGATTTGTTGCTAGAAAATGGAACACAGTTGTAAACAAGGAAGGTAGAGTGTCACAACAAACATTTGTGTGTTTCAAAGAGGGATATCGATTGAAAAAACACTTGAAAAACGAGAATCGTAAGAGGGAGGCGAGAGCAATTACTAGGTGTGGTTGTTTTGCATTTTTGAAAGTTCGATATGCTAGAGATGTAAGTCGTTGGATTGTAAAAGCTTTCTCTGATGAGCATAGTCATGAGCTGTTACCTAGGACATACGAGGGAATGCTGACTTCACACCGGAAGATGAATGAAACAGACATAATGCAAATGAATACCATGCGTGAAGTTGGTATAGGTGTTACACAAATATATAGGTTAGTGGAAAATCAATCAGGAGGCTATAAAAATGTTGGTTACCGTAAAAGTGATATGTACAATGAAATTTTTAAACAAAGAAGATCTGAAGGTGGTGATGCCAGAGGTGCTTTATCTTATCTTCGAGCATTGGGTCGCAATGATAAGGACCTGTTTTGGTCTCATACTGTGGATGAAGAAGGGAGGCTGAAACATCTATTTTGGAGTGATGGTAGAAGCCAATGTGATTACAAATTGTTTGGTGATGTGCTTGCGTTTGATGCAACCTATAGACGGAACAAGTATATGTCACCTCTGGTTGTGTTTGCTGGAGTAAATCATCATAATCAAACCATTGTTTTTGGTAGTGCACTAGTTGCGAACGAAACAGAAGAGACATATGTGTGGTTACTTGAAGAGTTTTTACGTGCAATGAAAGGAAAGGTTCCAATTTCTATTATTACTGATGGTGATATTGCGATGAGGAATGTTATCAAGCATGTTTTCCCTTCAGCCCGTCATAGGTTATGTGTGTGGCATTTACTGAGGAACGCTACTAGCAACATAAGCAACCCTAGGTTCACGACCAAATTTAAAAGGTGTATGCTAGGTGATTATGAGGTTGGGAGATTTAGAACGAAATGGGAGGAGCTGATTTGTGAGTTTGGTTTGGAGAGCAACCGATGGGTCAGTGAACTGTACGATAAGAAGAAAATGTGGGCTACTGCCCACATACGTGGTAGCTTCTTTGCTGGCTTCAGGACGACCTCTAGGTGTGAGGGCCTTCACTCTCAAGCAGGTAGATATGTTCATTACCGAAATAACTTGAGAGAGTTCTTGAGGCACTTTTTCCAATATTTGGCTTATACTAGGCAGAAAGAGTTGGAGGCTGACTTTGAATCAATAAATGGAGATCCTGTTCTACAAACACCTTTTGATGATATTGAAGCATCTGCGGCAAAGTTGTATAGTAGGAAGGTCTTTATGAAGTTTAGAGTCGTGCTTTGGCGGGCATGTAAGCTGAAGGTTAGTGGATGTGAGCGGACCCCAAACTGTCACATATATATTGTGACAAACAGATCAAGATGTGGAAGAGAGTGGCATGTGTCATATGTGGCACAAAATGAAGAAGTCAAGTGTTCTTGTCAGCGGATGGAGTCAATGGGTATCCCATGTGAGCATATTGTTGTTCTTTTACATTACCTCGATATAAAACAATTGCCAAATTCACTTATTTTAGAAAGGTGGACAAAATATGCCAAGCAATCTGTGGATGGTGCTGATTTGGGAACTAGTAGTTTTGGTGGTTCTATGTGGAAGAGTCAAGTGATATCATTGTTGTTTGATTGTTATGAGATGTGCAAACTTGCGGGTAAAAGGATGGACAAATTGGAGGAAACAAGAGGAGTTATTAGGAATCATATGCAAAGTTTGAAAGTTAATGAAGAAGATGGAAAGAATGATGAAGGTAATGATCAGGAAGGGGATGACATTAACCTGAGGGATCCTTCACGTGTCAGAAGTAAAGGTTGTGGATCGAGGCAGTCTACAGGTGGAAGTAGAGGCAATAGGAGGACCACTACATGCAGTGTATGCCAAGGTCATGGTCACAACAAACAGACCTGTCGACTTCGTAGAAGGCAGGCACATCCAGAGACAAATGAAACAACAGGTAGTGGAGATGACATGAATGAGTAA 2124 0.403 MIRISEDEFKMYHFISRLVAFEFYNKYAQKRGFVARKWNTVVNKEGRVSQQTFVCFKEGYRLKKHLKNENRKREARAITRCGCFAFLKVRYARDVSRWIVKAFSDEHSHELLPRTYEGMLTSHRKMNETDIMQMNTMREVGIGVTQIYRLVENQSGGYKNVGYRKSDMYNEIFKQRRSEGGDARGALSYLRALGRNDKDLFWSHTVDEEGRLKHLFWSDGRSQCDYKLFGDVLAFDATYRRNKYMSPLVVFAGVNHHNQTIVFGSALVANETEETYVWLLEEFLRAMKGKVPISIITDGDIAMRNVIKHVFPSARHRLCVWHLLRNATSNISNPRFTTKFKRCMLGDYEVGRFRTKWEELICEFGLESNRWVSELYDKKKMWATAHIRGSFFAGFRTTSRCEGLHSQAGRYVHYRNNLREFLRHFFQYLAYTRQKELEADFESINGDPVLQTPFDDIEASAAKLYSRKVFMKFRVVLWRACKLKVSGCERTPNCHIYIVTNRSRCGREWHVSYVAQNEEVKCSCQRMESMGIPCEHIVVLLHYLDIKQLPNSLILERWTKYAKQSVDGADLGTSSFGGSMWKSQVISLLFDCYEMCKLAGKRMDKLEETRGVIRNHMQSLKVNEEDGKNDEGNDQEGDDINLRDPSRVRSKGCGSRQSTGGSRGNRRTTTCSVCQGHGHNKQTCRLRRRQAHPETNETTGSGDDMNE. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09846 707 SMART 26again6 520 547 IPR006564 GO:0008270
Seca4g09846 707 Pfam MULE transposase domain 232 326 IPR018289 -
Seca4g09846 707 PANTHER OS01G0519700 PROTEIN 20 614 - -
Seca4g09846 707 MobiDBLite consensus disorder prediction 651 679 - -
Seca4g09846 707 ProSiteProfiles Zinc finger SWIM-type profile. 509 545 IPR007527 GO:0008270
Seca4g09846 707 Pfam FAR1 DNA-binding domain 22 113 IPR004330 -
Seca4g09846 707 MobiDBLite consensus disorder prediction 617 650 - -
Seca4g09846 707 MobiDBLite consensus disorder prediction 617 707 - -
Seca4g09846 707 Pfam SWIM zinc finger 516 544 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09846 Seca-Chr4 230910219 230912342 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g09846 MULE 6.2e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09846 - - tpra:123913749 693.73