Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09839 ATGAGCATGTTAGGCCTTAGAGACCTAGTTCTCATAGCTCCAACCCCTTCTTCCCTTCATCACCAACAAGCCCAACCCATTTCAACTGACCACCATGCCAACCTTCCTTTGCCTTCATCAGCTGCTCTCAGTGTTGGTCTTGGCATTTTCCCTCTCCTAACTGCCACTCCCTGTGTTCCACATAACAGTGGTGTTGATCAAGACTGTGACAACAACCCCAACTACTGGAACCTCAAGATGTGTCCACCACAAGTGAATTCAGACAGAAAAGGAATAATGATCAACATGGAAGATGATGAAAACAGCAAACACATGATGGGGTGTGAAGAAAATGGTGTCTATGGAAGTGACTTCAGGGTGTGCCAGGATTGTGGAAACAGAGCAAAGAAAGATTGCAGTTTCAAAAGATGCAGAACATGTTGTAAAGGACGTGGCTTTAATTGCAACACTCACGTGAAGAGCACGTGGGTTCCAGTATCACTGAGGCGTGACCGGAATATGGCGGTGGCTGATGGTGGTGGTGACAGTGATGGTGGTACTGGTGCTTCTTCTGGAGCTAAGAGAAATGCTGCTGCAACTTCTCACAGTTCAACCTCTAATGCTACTACAACAAGAAGCTTAAGCTTAGATACTAGCTCTTGTCATCAAGATGCTGGTTTCAAACAGTCTTTGCCACGTCATGTTCGTGCACCTGCTGTGTTTAAGTGCCATAGAGTGAGTGCTATTGGCAATGGTGAAGATGAGTTTGCTTACTTGGCCACTGTTCATATTAGTGGCCATGTGTTCAAGGGGTTTCTGTATGATCAAGGTGTTGATAGGAAAAATGAAATGCCTTGTGTTTCAGAGCTGCAACTGGGGAACAGTGGCAGTGGTAAGAGTAATAATAGGGAATGTTCTCCTGCAATTGGGGTTCCTACTAGTGCCTACCCTGCTTCTGCTTGCTGA 945 0.4582 MSMLGLRDLVLIAPTPSSLHHQQAQPISTDHHANLPLPSSAALSVGLGIFPLLTATPCVPHNSGVDQDCDNNPNYWNLKMCPPQVNSDRKGIMINMEDDENSKHMMGCEENGVYGSDFRVCQDCGNRAKKDCSFKRCRTCCKGRGFNCNTHVKSTWVPVSLRRDRNMAVADGGGDSDGGTGASSGAKRNAAATSHSSTSNATTTRSLSLDTSSCHQDAGFKQSLPRHVRAPAVFKCHRVSAIGNGEDEFAYLATVHISGHVFKGFLYDQGVDRKNEMPCVSELQLGNSGSGKSNNRECSPAIGVPTSAYPASAC. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09839 314 NCBIfam LRP1 C-terminal domain 224 271 IPR006511 -
Seca4g09839 314 NCBIfam putative zinc finger domain, LRP1 type 120 160 IPR006510 -
Seca4g09839 314 MobiDBLite consensus disorder prediction 167 205 - -
Seca4g09839 314 Pfam Domain of unknown function (DUF702) 120 272 - -
Seca4g09839 314 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 83 299 IPR007818 GO:0003700|GO:0006355
Seca4g09839 314 MobiDBLite consensus disorder prediction 182 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09839 Seca-Chr4 230814335 230818762 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09839 1 309 C2H2 Transcription Factor Family AT5G12330 39.752 1.04e-57 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Seca4g09839 DUF702 9.3e-54 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09839 - - gmx:100777812 420.624