Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09824 ATGGCGGTTGAATTTGTTGGTAGTGCACTTCTCTCTGCTCTCCTTGAGGTGGCATTTGACAGGCTGGCTTCTGCTGAAATTGGGGACTACTTTGGAGGAAGAAAATTCAATGAGAAGCTGCTGAACAAGTTGAACATCATGCTGCTCTCCATCAATTCATTGGTTGATGATGCAGAACAAAAACAGATCAAAGATCGAAAGGTGAGAGCATGGCTTGGTAAGGTCAAAGATGCTGTCTTTGATACAGAGGATCTGTTGGATGAAATAGGCACTCAAGTCTCACAATGGGAGCTAGGAGCTGAATCTCAGACCAGCATCAGCAAGGTACGAAATTTATCCAATGCTTCTGTCAGTTTATTTGATAAGGAAATTGAATCAAAGATGCAAGAAATCCTTGACAACCTAGAATATCTTGCAAGCCAAAAGGATATACTGGGTTTGGAAAAGGCTAGTGGTTTTGGTGTTGGATCAAGAAGACAAGTGTCACCAAAATTGCCATCAACATCTTTGCCAGATGAATCTGTTATATATGGTAGAGATGTTGACAAAGAAATTATCTTTAATTGCATGATATCTGACCCTCAGAATAGTAACCAGCTATCAATAATTTCTATAGTAGGTATGGGCGGGATGGGTAAGACCACCCTTGCCCAACATTTATACAATGACCCAAGGATGGAGGGTGAATTTGATATCAAAGCTTGGGTCTGTGTTTCAGATGAATTTGATGTTTTAAAGGTAACAAGAACAATTCTTGTGGCAATCACTAAATCAACTGATGATAGTATTGATTTAAATATGCTTCAAGTAAAATTGAAGGAAAAATTGATGGCGAAGAAATTTCTTCTTGTTTTGGATGATGTTTGGAACGAAAACCATATGCAATGGAAAGCTTTGCAAACTCCTTTTAATCATGGGACTCAGGGAAGCAAAATTCTTGTCACTACACGTAGTATGAAGGTTGCATCAATCATGCGATCAACTAAAATACATCAGCTAGAGCAATTACAAGGAGATCATTGCTGGAAATTGTTTGCCAAGCATGCATTCCAAGATGAAAATCCTCAATTAAATCCTGAGTTTAAGGAGATTGCTGTAAAGATAATTGAAAAATGCAAAGGATTGCCTCTAGCCTTAAAAACTATTGGAAGTCTCTTATACACAAAATCATCTATTTTGGAATGGGAAAGCATATGGAAAAGCGAGATATGGGACTTGCCAGAAGAGGATAGCAATATAATCCCTGCTTTAATGTTGAGCTATTATCACCTTCCTTCTCATCTGAAGAGTTGCTTTGCTTATTGTTCCTTATTCCCAAAAGATTTTGTGTTTGAAAAGGAGCAATTAATTCTATTATGGATGGCTGAAAATTTTCTACAATGCCATCAACATAGTAAGAGTATGGAAGAAGTTGGTGAACAATACTTTGATGATTTGTTATCAAGGTGTTTTTTTCAACAATCAAATGGAGATGAAATATTACAAGTAGAAGAAGCACAAAATATATTGAAAATGACTCGTCATTTTTCATTCTTAAGAAATACATATGAAGGTTCTAAAAAGTTTGAGACCTTATACAGGGCTAATAGATTACGTACATTTCTACCGTTAAGTATGAATCCCCATGAAACCATTCAGAAACACTGGATGCCTAGCACATTAAGGCATGACTTATTCTCGAAGTTTAAGTACTTGCGTGTCTTATCTATGTCTAGTTATTGCAATGTGTTTGAGTTGCCTAACACTATAGGTAATCTTAAGCATCTTCGTTATCTAGACCTTTCTCATACTGATATCACAAAGTTGCCTGAAACAATATGTTTGTTGTATAACTTACAAGTATTGAAGTTGAAGGACTGCCGATCTTTAGTGGAGCTGCCCTTGAACTTGCATAAACTCACTAATTTGCATTATCTTGATTTTAGTGGAACTAAGGTGCGAAAGATGCCAATGCATTTTGAGAAATTAAAGAATCTTCAAGTATTGAGTTCATTCTATGTGGGCAAAAATAACGAGTCCAGTATTCAACACTTAGGAGAACTTAGTCTTCATGGGACATTATCAATTTCAGAGCTGCAAAACATTGTCAATCCGTTGGATGTATTAGCTGCAAATTTGAAAAATAAAATACACCTTGTGAAGCTAGAGTTAGAATGGAGTGAAAATCATGATGATTCACAAAAAGAAAGGGAAGTGCTTGGGAAGCTACAACCTTCCAAACACTTGAAAGAGCTGTCAATCAAGGCGTATGGTGGTACACGATTTCCAGATTGGTTTGGGGATAATTCATTGTCCAATATGGTGTCCTTAAAGCTGAGCAAGTGTGATAACTGTGTGTTGTTGCCTCCACTTGGACTTTTGCCATCTCTTAAGGAACTATCAATTGTGGGGCTCCCTGGGATAGTGGTGATTGATATTGAGTTTTATGGGAATGAGAGTAGCTCTTCTTCTACCATTCCATTTGCATCCTTGGAAACCTTAGAATTCAAGGATATGGAGGGGTGGGAAGAATGGGAATGTAAAATAGTGAGGGGTTCTTTTCCATGTCTTCGAGAGCTCTCTATAGAGAATTGTCCCAAGCTGAAAGATCACTTGCCAGATAGACTTCCTTATTTAAAGAAATTAAGAATTTATGATTGCAAACAGCTTGTGGCTTCTATTCCCTGTGCTCCATCCATTGTTGAATTAAATCTATATAATTATGGAAAGCTGCAACTTGATTATCATCCATCTACTCTTAAATCCGTCAGCATTGGAGGACACTACATGAAAGACCCGATACTTGAAAGGATTCGGCACATTTTATTTAATTCCACTATTGAAACATTAAAAATTACTGATTTCCCAACTATGAATATTACCATGAGCCATTGCTACAATTTCCTTGAAACATTGAGAATAAGAGGTAGTTGTGACTCTTTAAGGAACTTTCCTCTGGATATCTTCCCAAAACTTTGTTCCCTCCATTTTGAAGGGCTTAGTAATCTTGAAATGATATCACATGAACGTGGTCATAATCTCACACCTCTAACAAATCTAAGCATCATCTCATGCCCTAAATTTGTATCATTTCCCAGAGGAGGACTCTCTGCACCCAAGCTGGAGAGGTTTACAATTAAGATATTGGAGAATCTAAGATCATTGTCAGAACGTATGCAGATCCTGCTTCCATCTCTTAATTTCCTTGAAATATATGGTTGTCCACAAATAGAGTCATTCTCTGATGGAGGTTTGCCACCAAACCTAAAATACCTGCATCTCAGAAATTGCTCCAAACTTCTTATTGCCTCACTGTCACTGAAATGTGTTTTGGCAACCACCACTTCTCTATCTTACTTGGGTGTGGAAAATTTGGATGTGGAGTCTTTCCCTGACGAAGGATTGCTGCCACACTCTCTTGCTTTTCTGTCGATCAGAAATTGTCCTGATCTTAATATACTGGATTACAAGGGTCTCTTCCACCTCTCCTCTCTTACGACATTGCAACTTAAGGACTGCCCCAAACTACAATGCTTACCAGAGGAGGGTCTCCCCAAATCCATTTCAACTTTAACAATTCAAGGCAGTTGTTCATCATCACTCAAAAGGCGTTGCCAGAAACCAAAAGGCGAAGATTGGGGAAAGATTAGTCACATTCAATGCATATGGATTGAAAATGACTTAATAACATGA 3672 0.3772 MAVEFVGSALLSALLEVAFDRLASAEIGDYFGGRKFNEKLLNKLNIMLLSINSLVDDAEQKQIKDRKVRAWLGKVKDAVFDTEDLLDEIGTQVSQWELGAESQTSISKVRNLSNASVSLFDKEIESKMQEILDNLEYLASQKDILGLEKASGFGVGSRRQVSPKLPSTSLPDESVIYGRDVDKEIIFNCMISDPQNSNQLSIISIVGMGGMGKTTLAQHLYNDPRMEGEFDIKAWVCVSDEFDVLKVTRTILVAITKSTDDSIDLNMLQVKLKEKLMAKKFLLVLDDVWNENHMQWKALQTPFNHGTQGSKILVTTRSMKVASIMRSTKIHQLEQLQGDHCWKLFAKHAFQDENPQLNPEFKEIAVKIIEKCKGLPLALKTIGSLLYTKSSILEWESIWKSEIWDLPEEDSNIIPALMLSYYHLPSHLKSCFAYCSLFPKDFVFEKEQLILLWMAENFLQCHQHSKSMEEVGEQYFDDLLSRCFFQQSNGDEILQVEEAQNILKMTRHFSFLRNTYEGSKKFETLYRANRLRTFLPLSMNPHETIQKHWMPSTLRHDLFSKFKYLRVLSMSSYCNVFELPNTIGNLKHLRYLDLSHTDITKLPETICLLYNLQVLKLKDCRSLVELPLNLHKLTNLHYLDFSGTKVRKMPMHFEKLKNLQVLSSFYVGKNNESSIQHLGELSLHGTLSISELQNIVNPLDVLAANLKNKIHLVKLELEWSENHDDSQKEREVLGKLQPSKHLKELSIKAYGGTRFPDWFGDNSLSNMVSLKLSKCDNCVLLPPLGLLPSLKELSIVGLPGIVVIDIEFYGNESSSSSTIPFASLETLEFKDMEGWEEWECKIVRGSFPCLRELSIENCPKLKDHLPDRLPYLKKLRIYDCKQLVASIPCAPSIVELNLYNYGKLQLDYHPSTLKSVSIGGHYMKDPILERIRHILFNSTIETLKITDFPTMNITMSHCYNFLETLRIRGSCDSLRNFPLDIFPKLCSLHFEGLSNLEMISHERGHNLTPLTNLSIISCPKFVSFPRGGLSAPKLERFTIKILENLRSLSERMQILLPSLNFLEIYGCPQIESFSDGGLPPNLKYLHLRNCSKLLIASLSLKCVLATTTSLSYLGVENLDVESFPDEGLLPHSLAFLSIRNCPDLNILDYKGLFHLSSLTTLQLKDCPKLQCLPEEGLPKSISTLTIQGSCSSSLKRRCQKPKGEDWGKISHIQCIWIENDLIT. 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09824 1223 Gene3D - 157 331 IPR027417 -
Seca4g09824 1223 PRINTS Disease resistance protein signature 584 600 - -
Seca4g09824 1223 PRINTS Disease resistance protein signature 275 289 - -
Seca4g09824 1223 PRINTS Disease resistance protein signature 372 386 - -
Seca4g09824 1223 PRINTS Disease resistance protein signature 202 217 - -
Seca4g09824 1223 Gene3D Ribonuclease Inhibitor 538 944 IPR032675 -
Seca4g09824 1223 PANTHER DISEASE RESISTANCE PROTEIN RP 48 880 IPR044974 GO:0006952
Seca4g09824 1223 Gene3D - 18 131 - -
Seca4g09824 1223 FunFam Probable disease resistance protein At1g61300 159 329 - -
Seca4g09824 1223 Gene3D - 335 419 IPR042197 -
Seca4g09824 1223 ProSiteProfiles Leucine-rich repeat profile. 588 609 IPR001611 GO:0005515
Seca4g09824 1223 SUPERFAMILY L domain-like 504 884 - -
Seca4g09824 1223 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 435 IPR027417 -
Seca4g09824 1223 Gene3D Ribonuclease Inhibitor 1032 1204 IPR032675 -
Seca4g09824 1223 Pfam NB-ARC domain 196 400 IPR002182 GO:0043531
Seca4g09824 1223 Gene3D - 420 508 IPR036388 -
Seca4g09824 1223 Pfam Rx N-terminal domain 11 101 IPR041118 -
Seca4g09824 1223 SUPERFAMILY L domain-like 936 1209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09824 Seca-Chr4 230410974 230414701 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09824 203 797 WRKY Transcription Factor Family AT5G45050 24.465 2.04e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09824 - - gmx:100781012 1368.6