Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09816 ATGGAAGTTAAGCGCCGCGCCGTCCGAACCTTAGTCTCGAAGCTAAGCTCCGTGTCCGAACGCACCCGCATCGATGCACTCTGCGAGCTCCGTCTCATGTCGAAGCAGGAACCGGAAACCCGACCTGTGATAGCCGAATCGGGCGCCATCCCTTTCCTTGCTGAAACTCTTTATTCCTCTTCTCACCCTTCCCAAGAGAACGCTGCAGCAACTCTATTGAACCTCTCGATAACGGAGAAGGAGCCTCTCATGTCCACGCGCGGAGTCCTCGACGCGCTCGCACACGTGATCTCCCACCACAGTTCTTCCTCCGCTGCCGCCGCTGTTCAGTCCTCCGCCGCTGCCATCCACAGCCTCCTCTCCTCCGTCGACGACTACCGCCCTGTCGTCGGGTCTAAGCGCGAGATCGTCTACGCGCTCGTCGACATCCTCCGCTGCCACCGTTCCTCGCCGCCGCGCACCGTCAAGGACGCGCTTAAAGCCTTGTTTGCCATCGCCCTACATCCTCTCAACCGCGCCACCATGGTTCAATTCGGCGTCGTACCGGCGCTGTTTTCGCTCATCGTGAACGACGGAAGGGTTGGGATCGTGGAAGATGCCACCGCCGTTATCGCGCAGGTCGCTGGCTGCGACGAAAGCGTCGAGGCCTTCCAGAAGGTCTCCGGCGTCCGCGTCCTCGCCGATCTCCTCGACCTCGCCACCGGCGCCAGCATGCGGACCAAGGAGAATGCCGTGTCGACGCTGCTCAATATGGTCCGGTGCGGCGGTGACGCGGTGGCCGGCGATGTCAGAGATGCCGTGGCTTTCGGTGCCTTGGATGGAATCGCCGACGTTAAAGATAACGGTAGTACCAAGGGGAAGAGCAAGGCCGCGGAGTTGTTGAAGTTGTTGCTCGGTGATAGTCGTGGAAGCAATGGCAATGTCTTTTTCAATAGTGGTTCATCGTTTGGTTCTTTGCTAGATCATGATAGCGAATGA 978 0.593 MEVKRRAVRTLVSKLSSVSERTRIDALCELRLMSKQEPETRPVIAESGAIPFLAETLYSSSHPSQENAAATLLNLSITEKEPLMSTRGVLDALAHVISHHSSSSAAAAVQSSAAAIHSLLSSVDDYRPVVGSKREIVYALVDILRCHRSSPPRTVKDALKALFAIALHPLNRATMVQFGVVPALFSLIVNDGRVGIVEDATAVIAQVAGCDESVEAFQKVSGVRVLADLLDLATGASMRTKENAVSTLLNMVRCGGDAVAGDVRDAVAFGALDGIADVKDNGSTKGKSKAAELLKLLLGDSRGSNGNVFFNSGSSFGSLLDHDSE. 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09816 325 SUPERFAMILY ARM repeat 5 298 IPR016024 -
Seca4g09816 325 FunFam ARM repeat superfamily protein 2 302 - -
Seca4g09816 325 Pfam Armadillo/beta-catenin-like repeat 38 76 IPR000225 GO:0005515
Seca4g09816 325 SMART arm_5 37 77 IPR000225 GO:0005515
Seca4g09816 325 SMART arm_5 122 167 IPR000225 GO:0005515
Seca4g09816 325 SMART arm_5 168 209 IPR000225 GO:0005515
Seca4g09816 325 SMART arm_5 210 253 IPR000225 GO:0005515
Seca4g09816 325 PANTHER U BOX DOMAIN-CONTAINING 7 297 - -
Seca4g09816 325 Gene3D - 2 298 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09816 Seca-Chr4 230339274 230340251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09816 8 306 U-box Gene Family AT2G23140 33.667 9.95e-32 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09816 - - gmx:100787115 440.654