Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09814 ATGGCGGAGAAAGAAGAGAACGCGGTATCGACCCGATCCGAATTCATGAGGGGTCGGGTGAAGAAGATAATGACTCTGGACAAGGACGTCCAGAGGGTGAGCTCAGAAGCGTTGTTTCTGGTGTCACGCTCCACGAAGCTTTTCCTCCAATTACTGGCTAAAAAGTCTGCAGAGGTTGCCATTGAGAAGAAACGCAAGACCGTGAAGCTTGAACACATAAGAACCGACGTGAAAAAGCACCAGCCAACCAGGGATTTCCTCCTTGATTCGCTTCCGATGCCTTCTCAACCACTTGCAATCGATGCAGGGCCAATTGCTAAGTTTTTCCACAACTGCCCAGATAGTGCATTTCAGGTTGCCACATTCCTTATTACAGAGGATTGGTGCAATTGCTGCATTTTGGGACCTCTCCACCGCCTTGGTCTTTGA 429 0.4918 MAEKEENAVSTRSEFMRGRVKKIMTLDKDVQRVSSEALFLVSRSTKLFLQLLAKKSAEVAIEKKRKTVKLEHIRTDVKKHQPTRDFLLDSLPMPSQPLAIDAGPIAKFFHNCPDSAFQVATFLITEDWCNCCILGPLHRLGL. 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09814 142 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 18 74 IPR003958 -
Seca4g09814 142 SUPERFAMILY Histone-fold 18 91 IPR009072 GO:0046982
Seca4g09814 142 Gene3D Histone, subunit A 1 93 IPR009072 GO:0046982
Seca4g09814 142 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09814 Seca-Chr4 230319223 230319651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09814 5 98 CCAAT-HAP5 Transcription Factor Family AT5G43250 62.766 1.21e-36 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca4g09814 CBFD_NFYB_HMF 1.8e-15 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09814 - - ccaj:109814845 157.147