Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09810 ATGCCACCGGAGGAACTCGCAGCAGACCACGGAAGCAGTCAAATTTCCGATACAAAAATGGATGGTTCATGGGAGAGCAGTGAAAGGCCTATTTTCAGAGATATTAGACGCTATTTCTGTCAATACTGTGGCATTTGCAGGTCCAAGAAGACCCTAATTACCAATCACATCAATTCTCTTCACAAGGAGGAGGTGGAAAAAGCACGAATCCAAAGGGATCAAGAAGCAGAGGGTATAAAATTGAATACTTGTAATGAATGTGGTGCTAGTTTTAAAAAACCTGCCTACCTGTTGCAGCACATGCAAAGCCATTCGCTTGAGAGGCCATACATTTGCACTATTGATGATTGTCAAGCAAGTTACAGAAGAAAGGATCACTTGACTCGTCATCTTCTACAGCATGAAGGGAAAATTTTTAAGTGTCCAATTGAGAATTGCAGCCGTGACTTTGCTTTCAAGGGAAACATGACAAGACATGTCAAGGAGTTCCATAGCAAAGATTCTACCTTGACTGGTTTTAAAGGTCAGAAGCAGTATGTTTGCCCAGAAATTGGCTGTGGGAAGGTTTTCAAATTTGCATCAAAGCTACAGAAGCACAAAGATTCTCATGGCAAACATGGTTTTGAAGAGTACCTATATTCTGCAGTTAAGCTGGAGTCAGTAGAGGTAGTGTGCTTATATCCTGGGTGTATGAAGCATTTTACTAATGTCCAGTGCCTTAGAGCACACACTAAATCCTGCCATCAATATGTGACCTGTGAAACTTGTGGGAAAAAGCAATTGAAGAACAACATTAAAAGGCACCTTCGTAAGCACGAAAATGGTAGTTCATCAGAGGTGTTTCCTTGTGAATATAAGGGTTGTAGCTGCACATTGTCAAGTAAATCCAATCTTCATAAGCATGTCAAGGCTGTGCACTTGCAAGATAAACCTTTCATGTGTGGCTTTCCCGATTGTGGCATGAGATTTGCTTATAAACATGTGAGAGATAACCATGAAAAATCCGGTTCACATGTTTTTACCCTTGGGGATTTTGAAGAAGCTGATGAACAATTCAGGTCAAGGACAAGGGGAGGGAGGAAGAGAAAGTACCCCACAGTTGAAATGTTAGTTAGGAAGAGAGTTGCTCCACCAAGTCAACTGGAGTTGCTCATGAAAGGTATTGAGTAG 1170 0.4145 MPPEELAADHGSSQISDTKMDGSWESSERPIFRDIRRYFCQYCGICRSKKTLITNHINSLHKEEVEKARIQRDQEAEGIKLNTCNECGASFKKPAYLLQHMQSHSLERPYICTIDDCQASYRRKDHLTRHLLQHEGKIFKCPIENCSRDFAFKGNMTRHVKEFHSKDSTLTGFKGQKQYVCPEIGCGKVFKFASKLQKHKDSHGKHGFEEYLYSAVKLESVEVVCLYPGCMKHFTNVQCLRAHTKSCHQYVTCETCGKKQLKNNIKRHLRKHENGSSSEVFPCEYKGCSCTLSSKSNLHKHVKAVHLQDKPFMCGFPDCGMRFAYKHVRDNHEKSGSHVFTLGDFEEADEQFRSRTRGGRKRKYPTVEMLVRKRVAPPSQLELLMKGIE. 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09810 389 Gene3D Classic Zinc Finger 276 354 - -
Seca4g09810 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Seca4g09810 389 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Seca4g09810 389 SUPERFAMILY beta-beta-alpha zinc fingers 175 203 IPR036236 -
Seca4g09810 389 Pfam Zinc finger, C2H2 type 110 134 IPR013087 -
Seca4g09810 389 Pfam Zinc finger, C2H2 type 83 104 IPR013087 -
Seca4g09810 389 Pfam Zinc finger, C2H2 type 179 203 IPR013087 -
Seca4g09810 389 Gene3D Classic Zinc Finger 18 109 - -
Seca4g09810 389 ProSitePatterns Zinc finger C2H2 type domain signature. 225 248 IPR013087 -
Seca4g09810 389 ProSitePatterns Zinc finger C2H2 type domain signature. 314 338 IPR013087 -
Seca4g09810 389 FunFam Zinc finger 45-like 78 105 - -
Seca4g09810 389 ProSitePatterns Zinc finger C2H2 type domain signature. 112 134 IPR013087 -
Seca4g09810 389 PANTHER ZINC FINGER PROTEIN 13 382 - -
Seca4g09810 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 281 311 IPR013087 -
Seca4g09810 389 SUPERFAMILY beta-beta-alpha zinc fingers 81 134 IPR036236 -
Seca4g09810 389 Gene3D Classic Zinc Finger 176 204 - -
Seca4g09810 389 SMART c2h2final6 179 203 IPR013087 -
Seca4g09810 389 SMART c2h2final6 281 306 IPR013087 -
Seca4g09810 389 SMART c2h2final6 38 61 IPR013087 -
Seca4g09810 389 SMART c2h2final6 312 338 IPR013087 -
Seca4g09810 389 SMART c2h2final6 251 272 IPR013087 -
Seca4g09810 389 SMART c2h2final6 110 134 IPR013087 -
Seca4g09810 389 SMART c2h2final6 82 104 IPR013087 -
Seca4g09810 389 SMART c2h2final6 223 248 IPR013087 -
Seca4g09810 389 SMART c2h2final6 139 164 IPR013087 -
Seca4g09810 389 ProSitePatterns Zinc finger C2H2 type domain signature. 141 164 IPR013087 -
Seca4g09810 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 139 169 IPR013087 -
Seca4g09810 389 SUPERFAMILY beta-beta-alpha zinc fingers 262 320 IPR036236 -
Seca4g09810 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 203 IPR013087 -
Seca4g09810 389 SUPERFAMILY beta-beta-alpha zinc fingers 120 167 IPR036236 -
Seca4g09810 389 MobiDBLite consensus disorder prediction 1 26 - -
Seca4g09810 389 ProSitePatterns Zinc finger C2H2 type domain signature. 283 306 IPR013087 -
Seca4g09810 389 Gene3D Classic Zinc Finger 110 134 - -
Seca4g09810 389 ProSiteProfiles Zinc finger C2H2 type domain profile. 110 137 IPR013087 -
Seca4g09810 389 Gene3D Classic Zinc Finger 135 172 - -
Seca4g09810 389 ProSitePatterns Zinc finger C2H2 type domain signature. 181 203 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09810 Seca-Chr4 230195627 230199897 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09810 106 341 C2H2 Transcription Factor Family AT1G72050 49.653 1.45e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca4g09810 zf-C2H2 0.0023 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09810 K09191 - gmx:100801812 553.518