LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g09805	ATGGGGTTGAGAAACCTGGGGCCATTAGGGTCTTTTATTAAAGAAGGATGGGAAAAAGCATTCTATGTTGCAAAGTTCTTCTGTTTTCTACATGTTACCGACAAGTATTTGATCGACCTTGTTCTGTCCGAAGGTCCTAGCATGCTTCCTACAATTGATTTGAAACCAAACGTGTTTCTCACCGAAAGGATCTCTACCCGATTTGGTAAAGTTGCTCGTGGAGATATTGTAGTCTTGCGTTCACCTCAAAACCCTAGAAAGCATATCACCAAACGTTTGGTTGGAATGGAAGGTGATAGTGTTACATACCTTTCTAGTCCCAAGGACAGTGATAAGCATGAGAATGTTCTGGTTCCCAAGGGTCACGTTTGGGTAGAGGGAGATAACAGGTATAATACCACCGACTCAAGAAATTTTGGTCCTGTTCCTTATGGCCTTATTGAGGGCAGGTATGGCCACTTAAAGATTTTGGACCTTTCCGGAAAAAATGATCTGAAGCTTTCAATCATGTAA	513	0.4191	MGLRNLGPLGSFIKEGWEKAFYVAKFFCFLHVTDKYLIDLVLSEGPSMLPTIDLKPNVFLTERISTRFGKVARGDIVVLRSPQNPRKHITKRLVGMEGDSVTYLSSPKDSDKHENVLVPKGHVWVEGDNRYNTTDSRNFGPVPYGLIEGRYGHLKILDLSGKNDLKLSIM.	171

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g09805	170	SUPERFAMILY	LexA/Signal peptidase	37	151	IPR036286	-
	Seca4g09805	170	CDD	S26_SPase_I	44	150	IPR019533	GO:0004252\|GO:0006465
	Seca4g09805	170	Pfam	Signal peptidase, peptidase S26	112	150	IPR019533	GO:0004252\|GO:0006465
	Seca4g09805	170	Pfam	Signal peptidase, peptidase S26	28	103	IPR019533	GO:0004252\|GO:0006465
	Seca4g09805	170	FunFam	Inner membrane protease subunit 1	34	159	-	-
	Seca4g09805	170	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	118	137	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g09805	170	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	36	52	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g09805	170	PRINTS	Bacterial leader peptidase 1 (S26A) family signature	89	101	IPR000223	GO:0006508\|GO:0008236\|GO:0016020
	Seca4g09805	170	PANTHER	PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED	11	151	-	-
	Seca4g09805	170	Gene3D	Umud Fragment, subunit A	34	159	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g09805	Seca-Chr4	230084004	230084987	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g09805	48	150	MADS-box Gene Family	AT1G29960	54.369	1.74e-36	121

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g09805	K09647		-	cave:132170793	199.904