Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09796 ATGGCGGTTGAATTAGTAGGCAGTGCTCTTGTTTCTGCTTTCCTTCAGGTGACATTTGACAGGTTGGCTTCTGCGGAAATTTGGGACTACTTTCAAGGAAGAAAGCTCAATGAGAAGCTGCTTAACAAGTTGAAGATCATGTTGGGGTCCATCAATGTTGTGCAAATCAGAAATCGAGATGTGAAAGCATGGCTTGATGCTGTCAAAGATGTTGTGCTTGATGCTGAGGATCTCTTGGATGAAATAGACACTCAAGTCTCCAAATGCAAGCTGGAAGCTGAATCTCAGTCCGTTACTAGCAAGGTGAGGAATTTCTTTAGTGCTGCTGTCAGTTCATTTGACAAGGGAATTGAATCAAGGATGCAAGAAGTCCTCAACAACCTAGAATATCTTGCAAGCAAAAAGGATATACTAGGTTTGAAGGAGGCTAGTACTTTTGGTGTTGGATTAGGTAGTCAAATGCCACAAAAATTGCCATCAACATCCTTGCTGGGAGAAACTGTTATCTATGGTAGAGATGTTGACAAAGAAATAGTCTTTAATTGGCTGATGTCTAACAATGAGAATGACAAATATCAACTGACAATTATTTCTGTGGTGGGTATGGGTGGGATGGGTAAGACCACACTTGCCCAACATCTATACAATGACCCAAGGATGGAGGGAAATTTTGATATCAAAGCTTGGGTATGTGTTTCACATGAATTTGATGTTTTTAAGATAACAAGAGCAGTTCTTGAGGCAATCACTGGATCAACTGATGATAGTAGAGACCTAAATATGGTTCATGGAAGATTAAAGGAAAAGTTGAATGGAAAGAAAATTTTCCTTGTTCTGGATGATGTTTGGAACGAAAACCATATGCAATGGGAGGCTTTGCAAACTCCTTTGAGTTATGGGGCTCAAGGAAGCAAAATTCTTGTCACTACACGCAGCATGAAAGTTGCTTCAATCATGCGATCTATTAAAATACATCAGCTAAAGCAATTGCAAGGAGATCACTGTTGGCAATTGTTTGCTAAATATGCATTCCAAGATGAAAATTCTGAAATAAATCCTGAGTTTAGGGAGATTGGTGTGAAGATAATTAAAAAATGCAAAGGATTGCCTCTGGCCTTGAAAACAATTGGAAGTCTCTTGTACACAAAGTCATATTTGTTAGGATGGGAAAGTATATTGACAAGCGAGATATGGGACTTACAAGAAGAGGATAGCAATCTTATCCCCGCTTTAATGCTTAGCTATCATAACCTTCCTTCCCATCTCAAGAGATGTTTTGCTTATTGTTCTTTATTCCCCAAAGATCATGAGTTTGAAAAGGAGCATTTAATTCTATTATGGATGGCAGAAAATTTTCTACAATGCTCTCAACAGAGCAAGAGTATGGAAGAAGTTGGTGAACAGTACTTCGATGATTTGTTATCAAGGTCTTTTTTTCAACAATCAAGTACAGATGAAAAACATTTTGTCATGCATGACCTTCTTAATGATTTGGCAAAATATGTATCTGGGGATTTTTCTTTCAGGTTGGTAGTTGAAGAAGTACAAAATATATCAAAAATGACCCGTCATTTTTCATTTGTAAAATATTGCAATCAATCTATTAAAGGGTTTGAGGGTTTAAATGATGCTAGAAGATTGCGTACATTTCTACCATTTGCAGGGATTCGTAGTGGCACGTGGATACATGAGTTGTTCGCCAAGTTTAAGTTCTTACGAGTCTTGTCTTTGCCTTTTCCCAATGTTAAAGAGGTGCCTAGCTCAATAGGCAATCTTAAACATCTCCGTTATCTAGACCTTGCTTATACTGCAATAAAAAAGTTACCTGAATCAACATGTTTGCTCTATAATTTACAAGTATTGAAGTTGAATCACTGCCTATCTTTGGAAGAGCTGCCCTTGAATTTGCATAAACTCACAAATTTGTGTCACCTTGATTTTAGTGGAACTAAGGTGAGAAAGATGCCAATGCATTTGGGAAAATTAGAGAATCTACAAGTATTGACTTCATTTTATGTGGGCAAAAGTAGCAAGTTCAATATTCAGCAATTAGGAGAACTCAATCTTCGTGGAACACTATCAATTTGGGAGCTGCAGAATATCACCAATCCCTTGGATGCATTAGAAGCTAATATGAAAAATAAAACACACATTGTGAAGCTACAATTAGGATGGAGTGCAAAGCATGATGATTCAGAGAAAGAAAGGGAAGTTCTTGAGAAGCTACAACCTTCCAAACACTTGGAAGAGCTGTCAATTAGGGAGTATGGTGGTACACGATTTCCAGATTGGTTTGGAGACAACTCATTATCCAATGTGGTGTCCTTAACATTGTGGAAGTGTGGAAACTGTGTTGTTTTGCCCCCACTTGGACTTTTGCCATCTCTCAAGAACTTATCAATTGAAGGACTATCAGAGATAATGGCGATTGGTAGAGAGTTTTATGGGAGTGGGAGTAGCTCTTCTACTATTCCATTTCCATCCTTGGAAACCTTATCCTTCAGTGGTATGGAGGGATGGGAAGAATGGGAATGTAAAATAGTGAGGGGTGCTTTCCCACGCCTTCAAAAGCTTTCTATAGGGACTTGTCCCAAGCTGAAAGATCACTTGCCAGAGCAACTTCCTTGTTTAATGACAGTAACTATTTATGATTGCAAACAGCTTGTGGCTTCTATTGCCAGGGCTCCGTCCATTCATCATTTATATCTAAAGAATTGTGGAAAGCTGCAACTTGATTATCATCCATCTTCTCTCAAAACCCTCAGGATCGGTGGACACTGCCTGGAAGGATCGTTGCTTGAAAGGATTGGGCACATCTTATCGGACAACTCTCTTGAAGAATTGTCCATAGTTAATTGCCCAAATATGAATATTCCCATACGCCATTGCTACAATTTCCTTGTAACATTGCACATGAGCAAGAGTTGTGACTCTCTAAGGAACTTTCCACTAGATATCTTCCCAAAACTTCAAATCCTCTGTTTAGAAGGGTGTAGTAATCTTGAAATGATTTCACAGGAGCATGATGATATTCTCACATCTCTGACACATTTGAAAATCAGGAATTGCCCTAAATTTGTATCATTTCCTAAAAGAGGACTCTCTGCACCTAAGCTAGACACATTTGAAATTAAGGGATTGGAGAATTTAAAAACATTGCCTGAATGTATGCATAACCTCCTTCCATTGCTTCGTAAGCTAGATCTAGAAGACTGTCCACAAGTGGAGTCATTCTCAAATGGAGGTTTGCCATCAAACCTAAAGTATCTGGTTCTCTGGAATTGCTCCAAAATTTTTATCGCCTCACTGAAATGTGCTTTGGCGACCAATACTTGTTTATGTCGCTTGTCTATTAAAGAAGTGGATGTGGAGTCTTTTCCTGATGAAGGCTTGCTGCCACTCTCTCTTACTTCTCTATCTATCAGTCGGTGTCCAGATCTTAAAAAACTGGATTACAAGGGTCTTTGCCACCTCTCCTCTCTTAAGTTATTGTCTCTTGAAGACTGTCCCAGTCTCCAATGCTTACCAGATGAGGGTCTTCCCAAATCGATTTCACATTTAGTTATCATAGGCAATTGTTCGTTGCTCAAAGAGCGTTGCCAGAAACCAAAAGGGGAAGATTGGGGGAAGATTTCTCACATTCAAAGCATACGGATTCACAAAAAATAA 3669 0.3889 MAVELVGSALVSAFLQVTFDRLASAEIWDYFQGRKLNEKLLNKLKIMLGSINVVQIRNRDVKAWLDAVKDVVLDAEDLLDEIDTQVSKCKLEAESQSVTSKVRNFFSAAVSSFDKGIESRMQEVLNNLEYLASKKDILGLKEASTFGVGLGSQMPQKLPSTSLLGETVIYGRDVDKEIVFNWLMSNNENDKYQLTIISVVGMGGMGKTTLAQHLYNDPRMEGNFDIKAWVCVSHEFDVFKITRAVLEAITGSTDDSRDLNMVHGRLKEKLNGKKIFLVLDDVWNENHMQWEALQTPLSYGAQGSKILVTTRSMKVASIMRSIKIHQLKQLQGDHCWQLFAKYAFQDENSEINPEFREIGVKIIKKCKGLPLALKTIGSLLYTKSYLLGWESILTSEIWDLQEEDSNLIPALMLSYHNLPSHLKRCFAYCSLFPKDHEFEKEHLILLWMAENFLQCSQQSKSMEEVGEQYFDDLLSRSFFQQSSTDEKHFVMHDLLNDLAKYVSGDFSFRLVVEEVQNISKMTRHFSFVKYCNQSIKGFEGLNDARRLRTFLPFAGIRSGTWIHELFAKFKFLRVLSLPFPNVKEVPSSIGNLKHLRYLDLAYTAIKKLPESTCLLYNLQVLKLNHCLSLEELPLNLHKLTNLCHLDFSGTKVRKMPMHLGKLENLQVLTSFYVGKSSKFNIQQLGELNLRGTLSIWELQNITNPLDALEANMKNKTHIVKLQLGWSAKHDDSEKEREVLEKLQPSKHLEELSIREYGGTRFPDWFGDNSLSNVVSLTLWKCGNCVVLPPLGLLPSLKNLSIEGLSEIMAIGREFYGSGSSSSTIPFPSLETLSFSGMEGWEEWECKIVRGAFPRLQKLSIGTCPKLKDHLPEQLPCLMTVTIYDCKQLVASIARAPSIHHLYLKNCGKLQLDYHPSSLKTLRIGGHCLEGSLLERIGHILSDNSLEELSIVNCPNMNIPIRHCYNFLVTLHMSKSCDSLRNFPLDIFPKLQILCLEGCSNLEMISQEHDDILTSLTHLKIRNCPKFVSFPKRGLSAPKLDTFEIKGLENLKTLPECMHNLLPLLRKLDLEDCPQVESFSNGGLPSNLKYLVLWNCSKIFIASLKCALATNTCLCRLSIKEVDVESFPDEGLLPLSLTSLSISRCPDLKKLDYKGLCHLSSLKLLSLEDCPSLQCLPDEGLPKSISHLVIIGNCSLLKERCQKPKGEDWGKISHIQSIRIHKK. 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09796 1222 ProSiteProfiles Leucine-rich repeat profile. 594 615 IPR001611 GO:0005515
Seca4g09796 1222 FunFam Probable disease resistance protein At1g61300 154 323 - -
Seca4g09796 1222 Pfam NB-ARC domain 176 394 IPR002182 GO:0043531
Seca4g09796 1222 SUPERFAMILY L domain-like 490 888 - -
Seca4g09796 1222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 429 IPR027417 -
Seca4g09796 1222 Gene3D Ribonuclease Inhibitor 1011 1078 IPR032675 -
Seca4g09796 1222 Gene3D - 329 419 IPR042197 -
Seca4g09796 1222 FunFam Probable disease resistance protein At1g63360 415 501 - -
Seca4g09796 1222 Gene3D Ribonuclease Inhibitor 539 914 IPR032675 -
Seca4g09796 1222 Gene3D - 420 501 IPR036388 -
Seca4g09796 1222 PRINTS Disease resistance protein signature 269 283 - -
Seca4g09796 1222 PRINTS Disease resistance protein signature 196 211 - -
Seca4g09796 1222 PRINTS Disease resistance protein signature 590 606 - -
Seca4g09796 1222 PRINTS Disease resistance protein signature 366 380 - -
Seca4g09796 1222 SUPERFAMILY L domain-like 897 1212 - -
Seca4g09796 1222 Gene3D Ribonuclease Inhibitor 1079 1222 IPR032675 -
Seca4g09796 1222 PANTHER DISEASE RESISTANCE PROTEIN RP 55 955 IPR044974 GO:0006952
Seca4g09796 1222 Gene3D - 153 324 IPR027417 -
Seca4g09796 1222 Gene3D - 34 122 - -
Seca4g09796 1222 Pfam Rx N-terminal domain 11 96 IPR041118 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09796 Seca-Chr4 229999237 230002926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09796 197 825 WRKY Transcription Factor Family AT5G45050 23.232 1.09e-12 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09796 - - gmx:100777280 1429.46