Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09772 ATGGCATCCTCAAATTCACCATGTGCAGCATGCAAATTTCTACGCCGAAAATGCCAACCAGAATGTGCATTTGCACCATACTTCCCACCTGATCAGCCTCAAAAATTTGCAAATGTTCATAGGATCTTTGGGGCAAGCAATGTCACAAAGCTTCTCAATGACTTACACCCTCACCAACGTGAAGATGCAGTGAATTCTCTTGCTTATGAAGCTGAGATGAGGCTCCGTGACCCTGTCTATGGCTGTGTAGGAGTCATCTCTCTCCTTCAACATCAACTCCGCCAACTCCAAATGAGTCTTTATTGTGCTAAATCCGAACTCTCTAGGTACCAAAACTTGAGCATCACCACCAACCACGGCCTCATGCCTGGTGGTGACTCTGCGGTCACGACCGCTAATTACTACCACTCACAGAATATAAGTGGTGGTAATGGTCGTGACAACAACAACTTCCATCACCATCATCATCATCATCAATTCTTTCCAATGGATCAGTATCAGCAACAACAGAAGCAGAATATGGTTAGAAATTTTGATGGAGGGAACAACTATGATGCAAGTCTCTTGGCCATGAACATATCTGCTAGCTTAGGACAGCTCAATCAGCTTCAACAGCATAGTGCTGCAAGCGGTGGTGATGACCGCCGCACCATCAACCGTTCCTAG 666 0.4565 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMSLYCAKSELSRYQNLSITTNHGLMPGGDSAVTTANYYHSQNISGGNGRDNNNFHHHHHHHQFFPMDQYQQQQKQNMVRNFDGGNNYDASLLAMNISASLGQLNQLQQHSAASGGDDRRTINRS. 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09772 221 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Seca4g09772 221 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 163 - -
Seca4g09772 221 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09772 Seca-Chr4 229603634 229605870 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09772 2 221 AS2 family AT1G65620 59.910 5.37e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Seca4g09772 LOB 4.7e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09772 - - mtr:25501092 340.117