LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g09759	GGATCACCAGAGTCAACAGTGCAGCCAATTAATACATTGAACTCTCCAACCTCTTACCATAGGCCTGACATTGTGGCTACAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGACGATGCTGGTAACTCTAAAGACTTAAGAAATTCGTGTCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGCTACAGAAGCTTGTGGGACTAATCCTCCAGCTAGGAATGATATGAAGAGTGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTCCGGGTCTCTTTGACCCGTGGCATTGTGGAATTAAAAGAAGTTGCCAAAAGATTGAACTTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGAAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCCTGTGAGAGCTCAGGGGAGTGA	522	0.433	GSPESTVQPINTLNSPTSYHRPDIVATELQEPFGGMLIDDAGNSKDLRNSCPSVAEAILEDLATEACGTNPPARNDMKSVTIKATYREDIIRFRVSLTRGIVELKEVAKRLNLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGRNIIRVLVHDITSNLGSSCESSGE.	174

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g09759	173	SMART	PB1_new	79	160	IPR000270	GO:0005515
	Seca4g09759	173	Pfam	PB1 domain	80	159	IPR000270	GO:0005515
	Seca4g09759	173	SUPERFAMILY	CAD & PB1 domains	73	164	-	-
	Seca4g09759	173	PANTHER	PROTEIN NLP8	22	172	IPR045012	GO:0003700
	Seca4g09759	173	CDD	PB1_NLP	80	159	IPR034891	-
	Seca4g09759	173	ProSiteProfiles	PB1 domain profile.	79	160	IPR000270	GO:0005515
	Seca4g09759	173	Gene3D	-	78	159	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g09759	Seca-Chr4	229328170	229328762	Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g09759	33	173	NLP Transcription Factor Family	AT4G24020	55.758	1.89e-52	175

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g09759	-		-	gmx:100786118	271.552

Showing 1 to 1 of 1 entries