Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09759 GGATCACCAGAGTCAACAGTGCAGCCAATTAATACATTGAACTCTCCAACCTCTTACCATAGGCCTGACATTGTGGCTACAGAACTTCAAGAGCCATTTGGAGGAATGCTAATAGACGATGCTGGTAACTCTAAAGACTTAAGAAATTCGTGTCCTTCAGTAGCAGAGGCCATTTTGGAGGATCTGGCTACAGAAGCTTGTGGGACTAATCCTCCAGCTAGGAATGATATGAAGAGTGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTCCGGGTCTCTTTGACCCGTGGCATTGTGGAATTAAAAGAAGTTGCCAAAAGATTGAACTTAGAGGTGGGTACATTTGATATCAAGTACCTGGATGATGATCATGAATGGGTTTTGATAGCCTGTGATGCAGACCTGCAGGAGTGCATGGATGTTTCAAGATCATCAGGAAGAAACATAATCAGGGTTTTGGTGCATGACATAACTTCCAATCTTGGAAGCTCCTGTGAGAGCTCAGGGGAGTGA 522 0.433 GSPESTVQPINTLNSPTSYHRPDIVATELQEPFGGMLIDDAGNSKDLRNSCPSVAEAILEDLATEACGTNPPARNDMKSVTIKATYREDIIRFRVSLTRGIVELKEVAKRLNLEVGTFDIKYLDDDHEWVLIACDADLQECMDVSRSSGRNIIRVLVHDITSNLGSSCESSGE. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09759 173 SMART PB1_new 79 160 IPR000270 GO:0005515
Seca4g09759 173 Pfam PB1 domain 80 159 IPR000270 GO:0005515
Seca4g09759 173 SUPERFAMILY CAD & PB1 domains 73 164 - -
Seca4g09759 173 PANTHER PROTEIN NLP8 22 172 IPR045012 GO:0003700
Seca4g09759 173 CDD PB1_NLP 80 159 IPR034891 -
Seca4g09759 173 ProSiteProfiles PB1 domain profile. 79 160 IPR000270 GO:0005515
Seca4g09759 173 Gene3D - 78 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09759 Seca-Chr4 229328170 229328762 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09759 33 173 NLP Transcription Factor Family AT4G24020 55.758 1.89e-52 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09759 - - gmx:100786118 271.552