Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09752 ATGAGGAAGAAGCTCGATACCCGTTTCCCTGCTGCTCGGATAAAGAAGATAATGCAAGCAGACGAGGATGTTGGAAAGATAGCATTGGCTGTGCCTGTTTTAGTTTCTAAAGCTCTAGAGCTATTTCTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAAAGAGGAGCAAAAACCATGAATTCATTGCACTTAAAACATTGTGTACAAAGCTACAATGTCTTTGACTTTCTGAGGGACGTTGTCAGCAGGGTTCCTGACTATGGCCATATAGTTATTCATGCACATAACGATGCAACTTACTTTTCCAGGAAAGCAGCTGGTGATGATTGCAATGACAGTGATGAAGAAGCTAAGAGAAGCAAGATGGTAATTGCACTTTTCCTTATATTTCAAGAGTTGGGCCACGCTGGCGGTACTGGTAGGGGAAGAGGCCGCGGTAGAGGAAGAGGACGTGGTCGAGGGTCTCGAGCTGTAGTAAGAGAGGCATATCATCAGGAAGCTGAACCTGAACCTTGTTTTACTGTTCAGCAGGGGAGCCAACATAATACAAATACAAGTGTGGCAATACATGATGGTGCAGAGTCAAAGGAGTTACCAAAGGAGAATATTGCAGTTCCTGTTGAAAGCTCAGAGTCACTCGGTACTATTGATCTGAATGCCAATACAAACGAAAACGAGGACAAAAAAGCTAGCACAGCAGCTAATCCTTCACTGTCTGAACCTCCAACAGAAAGCAAGCATGAAGAAATTCCGGGCTGGTCCCTTTCTGATGTGGACAAGATGGCCATTGACTCAATGCAGCTTGCACAACTTGGCAGGGGACTAGAAGAGGATGAGGAAGATTATGATGAGGAAGGGTAA 870 0.4437 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSRVPDYGHIVIHAHNDATYFSRKAAGDDCNDSDEEAKRSKMVIALFLIFQELGHAGGTGRGRGRGRGRGRGRGSRAVVREAYHQEAEPEPCFTVQQGSQHNTNTSVAIHDGAESKELPKENIAVPVESSESLGTIDLNANTNENEDKKASTAANPSLSEPPTESKHEEIPGWSLSDVDKMAIDSMQLAQLGRGLEEDEEDYDEEG. 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09752 289 MobiDBLite consensus disorder prediction 208 259 - -
Seca4g09752 289 MobiDBLite consensus disorder prediction 211 244 - -
Seca4g09752 289 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Seca4g09752 289 FunFam dr1-associated corepressor homolog 1 86 - -
Seca4g09752 289 MobiDBLite consensus disorder prediction 141 161 - -
Seca4g09752 289 SUPERFAMILY Histone-fold 4 88 IPR009072 GO:0046982
Seca4g09752 289 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 7 114 - -
Seca4g09752 289 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09752 Seca-Chr4 229240639 229245717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09752 1 276 CCAAT-HAP5 Transcription Factor Family AT3G12480 48.649 6.79e-70 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Seca4g09752 CBFD_NFYB_HMF 2.2e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09752 K21752 - gmx:100814712 380.948