Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09731 ATGGAGATGGAGGGAACACAACTCAGTGTGAGATTAATAACCTTTTCTTTCTTGCTATTGTTGAGCTTCAACTCACTTGTTACAAAGGCACAATCACCCAACTACTTGGGAGATGACTGCCGTAGTACCATCCCAAAAGCTCTCACCACTGCCTACAAAACCAATCTTAACACCACCTTCTCATGGCTAACCACTAATGCAGCCACAAGCAAAGGTTATAACCATACCACCATAGGCAACAAAACCTCAGGTGATGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTAGTTGGATACTTCTGTCAATTCTGTGTCTCTACTGCCACTAGAGATGTTCTTCAGCGCTGCCCCAACAGAGTCTCTGCTGTTGTATATTATGATTTCTGCATTCTCAGGTTCTCAAATGAAAACTTCTTTGGGAATGTTACAATAGACCCTTCATGGCATGATCTTGGAACAAAAAACATCTCTAGTGTAGCAGAGATTCAGAAAGGTGAGGACTTTATGAGAAGTTTGATCAGAAAAGCAACTATAGAGACCAAACAGTTGTTCTTTGTGGGTGGTTTCAATTTGAGTTCTACTGAGAGAAGGTATGGCATGGTGCAATGCAGCAGAGATCTTACAGATGAGGGGTGTAGACAGTGTTTAGAGGTCATGTTAGCAAAAGTTCCCAAATGTTGTGCACAAAAGAAAGGGTGGGTGGTTGGGTCTGCAAGTTGTCTCATGAAGTATGATGATTACATGTTCTATCTTTTTCACAACCAAGCATCTTCAGCTCCTCTGCCTGATCAGCAAACAGGAAAACAAAGGGGTAATGCTAGTAAGTCAAGAAAGTTGATCATTGGCTTCTGTGTCCTGGGGTCAGCAGCTCTACTATGTTTCAGTGTCTACTGCTTCTGGTGCAGGAACAGAGTTAGAAAAGGTAATTTGTTTCCTAATTGGCTGATACGTAACAACATTATTCTATCTTCACATGAGGAAACACTGAATGCAGACCTGCCTACAATCCCATTAATCACAATTCTACAGAGTACTGATAACTTTTCAGTAGCATCTAAATTAGGAGAAGGTGGATTTGGACCCGTTTACAAGGGAACTCTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCAAAAGCTTCTGGTCAAGGGTCAGAGGAGTTCAAGAATGAAGTAATGCTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAAAATGAAAAGCTACTTGTGTATGAGTATTTGTCAAATGCAAGTCTTGACTTTCACCTCTTTGATGATGAAAAAAGAAAGCAACTAGACTGGAAACTAAGATTAAGCATTATTAATGGAATAGCAAGAGGTATTTTATACCTTCATGAGGATTCTCGACTCAAAATAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAAATCATGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTCAAACGGGACAGAACCAGGCAAATACAAATCGAGTAATGGGAACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTAAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTTTAGAAATCATTAGTGGGAAAAAGAATAGTGGATTTTATCTTTCAGAACATGGCCAAAGTCTTCTTTTATATACATGGAAAAAATGGTGCGAAGGAAAATGTTTGGAACTAATGGATTCATTACTGGAAACATCCTTCATAGCCAGTGAAGTTGTGAAGTGCATACAGATTGGATTATTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCAAGTGTTGTTGTAATGTTGGCGAGTGACACAATGGCCCTTCCAAGACCCAAACAGCCAGCATTTTCTGTTGGAAGAATGACCTTAGAGGATGCATCTACTTCACAAAGTTCCAAGAATCTTTCTATCAATGAAGTAACAATCTCTAACATTTTACCAAGGTAA 2004 0.3972 MEMEGTQLSVRLITFSFLLLLSFNSLVTKAQSPNYLGDDCRSTIPKALTTAYKTNLNTTFSWLTTNAATSKGYNHTTIGNKTSGDAVYGLYDCRGDVVGYFCQFCVSTATRDVLQRCPNRVSAVVYYDFCILRFSNENFFGNVTIDPSWHDLGTKNISSVAEIQKGEDFMRSLIRKATIETKQLFFVGGFNLSSTERRYGMVQCSRDLTDEGCRQCLEVMLAKVPKCCAQKKGWVVGSASCLMKYDDYMFYLFHNQASSAPLPDQQTGKQRGNASKSRKLIIGFCVLGSAALLCFSVYCFWCRNRVRKGNLFPNWLIRNNIILSSHEETLNADLPTIPLITILQSTDNFSVASKLGEGGFGPVYKGTLPDGRQIAVKRLSKASGQGSEEFKNEVMLIAKLQHRNLVRLLACCLEENEKLLVYEYLSNASLDFHLFDDEKRKQLDWKLRLSIINGIARGILYLHEDSRLKIIHRDLKASNVLLNHEMNPKISDFGLARAFQTGQNQANTNRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIISGKKNSGFYLSEHGQSLLLYTWKKWCEGKCLELMDSLLETSFIASEVVKCIQIGLLCVQEDAADRPTMSSVVVMLASDTMALPRPKQPAFSVGRMTLEDASTSQSSKNLSINEVTISNILPR. 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09731 667 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Seca4g09731 667 FunFam Cysteine-rich receptor-like protein kinase 10 148 250 - -
Seca4g09731 667 CDD STKc_IRAK 355 620 - -
Seca4g09731 667 ProSiteProfiles Gnk2-homologous domain profile. 145 250 IPR002902 -
Seca4g09731 667 Gene3D Phosphorylase Kinase; domain 1 317 424 - -
Seca4g09731 667 Gene3D - 150 250 IPR038408 -
Seca4g09731 667 Gene3D - 38 139 IPR038408 -
Seca4g09731 667 Pfam Salt stress response/antifungal 168 248 IPR002902 -
Seca4g09731 667 Pfam Salt stress response/antifungal 49 136 IPR002902 -
Seca4g09731 667 SMART serkin_6 349 625 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09731 667 Pfam Domain of unknown function (DUF3403) 622 667 IPR021820 GO:0004674
Seca4g09731 667 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 49 663 - -
Seca4g09731 667 FunFam Cysteine-rich receptor-like protein kinase 28 36 138 - -
Seca4g09731 667 FunFam Liguleless narrow1 425 628 - -
Seca4g09731 667 Gene3D Transferase(Phosphotransferase) domain 1 425 628 - -
Seca4g09731 667 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 316 424 - -
Seca4g09731 667 Pfam Protein tyrosine and serine/threonine kinase 351 619 IPR001245 GO:0004672|GO:0006468
Seca4g09731 667 ProSiteProfiles Protein kinase domain profile. 349 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09731 667 ProSiteProfiles Gnk2-homologous domain profile. 34 139 IPR002902 -
Seca4g09731 667 SUPERFAMILY Protein kinase-like (PK-like) 336 653 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09731 Seca-Chr4 228533585 228537702 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09731 14 667 Receptor kinase-like Gene Family AT4G05200 41.082 1.49e-174 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g09731 PK_Tyr_Ser-Thr 7.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09731 - - gmx:100795922 1026.54