Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g09729 ATGGATGGAACACAGCTCAATGTGAGATCAATGACCTTTGCTTTCCTACTATTGCTTAGCTTCAACCCATTCATTACAAAGGCACAATCACCCAACTACATGGGAGATGACTGTCATAACACCACCCAAAAAGCTCCAAGCAGTGCATACAAAACCAATCTTAACAAAATCCTCTCATGGCTATCCTCTGATGCAGCCACAAGCAAAGGCTACAACCACACCACCATAGGCAACAAAACCTCAGGTGATGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTGGTTGGATACTTTTGTCAATTCTGTGTCTCTACTGCTACCAGAGAAGTTCTTCAGCGCTGCCCCAATAGAGTCTCTGTTATCATATGGTATGATTTCTGCGTTCTCAGGTACTCAAATGAGAACTTCTTTGGGAAAGTTTCAATAGACCCTTCATGGAATATTGTTGGAACTAAAAACGTCTCCAGTAGAATGGAGATACAGAAAGGTGAGGATTTTATGAGAAGTTTGATCACAAAGGTAACTAATGAGACCAAAAAGTTATTCTATATGGATGTGTTCAAATTGAGTTCTACTGAGAGAAGATATGGCCTGGCGCAATGCACCAGAGATCTTACAAATGAGCAGTGTAGAAAGTGTTTGGAGGCCATGTTAGCACAAGTTCCCAAATGTTGTGAACAAAAGGTAGGGTGGCTGGCAGGGTCTGCAAGTTGTCTCCTGAAGTATGATGATTACATGTTCTATCTTTTTCACAATCAATCATCTTCAGCTCCTCTGCCTGATCAACAAACAGCCAAACAAGGGAGTACTAGTAAATCAAGAAACTGGATCATTGTCTTGAGTGTCCTGGGGTCAGCAACTCTACTATGTTTCAGTGTGTACTGCTTCTGGTGCAGGAATAGAGTTAGAAAGGATTCACTGGCACCTGATACCATTCCTCTATCTTCATATGAGGAAACACTGAATGCAGACCTGCCTACAATCCCATTAATTACAATTCTACAGAGTACTGGTAACTTTTCAGACACATCTAAATTAGGGGCAGGTGGATTTGGCCCCGTTTATAAGGGAATTCTACCAGATGGAAGACAAGTTGCAGTGAAAAGGCTCTCAAAAGCTTCTGGTCAAGGCTCAGAGGAGTTCAAGAATGAAGTAATGTTTATAGCCAAATTGCAACACCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAAGAAAATGAAAAGCTACTTGTGTATGAGTATTTGTCCAATTCAAGTCTCGACTTTCACCTGTTTGATGATGATAAAAGAAAGCAACTGGACTGGAAACTGAGATTAAGCATTATTAATGGAATAGCAAGAGGTATTTTGTACCTTCATGAGGACTCTCCACTCAAAATAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTCATACAGGACAGAACCAGGCAAACACAAACCGAGTAATGGGAACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTAAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTTTAGAAATCATTAGTGGGAAAAAGAATAGTGGATTCTATCTGTCAGAACATGGCCAAAGTCTTCTTTTATATACATGGAAAAAATGGTGTGAAGGAAAATGTTTGGAACTAATGGATTTAGTACTGGAAACATCTTACATAGCCAGTGAAGTTGTGAAGTGCATACACATTGGATTATTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCAAGTGTTGTTGTAATGTTGGCTAGTGACACAATGGCCCTTCCAAAACCCAAAGCCCCAGCATTTTCTGTTGGAAGAATGATCCTATTGCTGAGCTTCAACCCATTCATTACAAAGGCACAATCACCCAACTATGTTGGAGATGACTGTCATAACACCACCCAAAAAGTTCTAAGCAGTACATACAAAACCAATCTTAACAGCACCCTCTCATGGCTATCCTCTGATGCAGCCACAAGCAAAGGCTATAACCACACCACCATAGGCAACAAAGCCTCAGGTGATGCTGTGTATGGCCTCTATGATTGCCGTGGTGATGTGGTTGGAACCTTTTGTCAATTCTGTGTCTCTACTGCTACCAGGGAAGTTCTTCAGCGCTGCCCCAACAGAGCCTCTGCTGTCATATGGTATGATTTCTGCATTCTCAGGTACTCAAATGAGAATTTCTTTGGGAATGTTACAATAGACCCTTCATGGCATGCTTTTGGAACAAAGAACATCTCCAGTGTAATAGAGATTCAGAAAGGTGAGGACTTTATGAGAAGTTTGATCAGAAAAGCAACTATAGAGACCAACCAGTTGTTCTATATGGATGGGTTCAATTTGAGTCCTACTCAGAGAAGGTATGGTTTAGTGCAATGCAGCAGAGATCTTACTAATGAGGGGTGTAGACAGTGTTTGGAGGCCATGTTAGCACAAGTTCCCAAATGTTGTGAACAAAGGATAGGGTGGCAGGTTTTGGCTGCGAGTTGTCTTATAAAGTATGATGATTATGTGTTCTACCTTTTTAACAATCAAGCACCTTCAGTTCCTGTGCGTAATCCACAAACAGATCAGGATACACCGAATGCAGACCTACCTACAATCCCATTAATCACTATTCTACGGAGTACTGATAATTTTTCAGAAGCATCTAAATTAGGGGCAGGTGGATATGGCCCCGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCAAAAGCTTCTGGTCAAGGGTCAGAGGAGTTCAAGAATGAAGTAATGCTTATAGCTAAATTGCAACATCGCAACCTTGTAAGACTTTTGGCATGCTGCTTGGAGGAAAATGAAAAGCTACTTGTGTATGAGTATTTGTCAAATGCAAGTCTTGACTTTCACCTCTTTGATGATGAAAAAAGAAAGCAACTAGACTGGAAACTAAGATTAAGCATTATTAATGGAATAGCAAGAGGTATTTTGTACCTTCATGAGGATTCTCGACTCAAAATAATTCACAGAGATCTCAAAGCTAGCAATGTTCTATTAGATCATGAAATGAATCCCAAAATATCAGATTTTGGATTGGCAAGGGCATTTCAAACAGGACAGAACCAGGCAAATACAAACCGAGTAATGGGAACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCAGTAAAATCTGATGTTTTCAGCTTTGGAGTACTTGTTTTAGAAATCATTTGTGGGAAAAAGAATAGTGGATTCTATCTTTCAGAACATGGCCAAAGTCTTCTTTTATATACATGGAAAAAATGGTGCGAAGGAAAATGTTTGGAACTAATGGATTTAGTACTAGAAACATCCCACATAGCCAGTGAAGTTGTGAAGTGCATACACATTGGATTATTGTGTGTTCAAGAAGATGCAGCAGATAGACCAACCATGTCAAGTGTTGTTGTAATGTTGGCGAGTGACACAATGGCCCTTCCAAGACCCAAACAACCAGCATTTTCTGTTGGAAGAATGACCTTAGAAGATGCATCTACTTCACAAAGTTCCAAGAATCTTTCTATCAATAAAGTAACAATCTCTAACATTTTACCAAGGTAA 3675 0.4011 MDGTQLNVRSMTFAFLLLLSFNPFITKAQSPNYMGDDCHNTTQKAPSSAYKTNLNKILSWLSSDAATSKGYNHTTIGNKTSGDAVYGLYDCRGDVVGYFCQFCVSTATREVLQRCPNRVSVIIWYDFCVLRYSNENFFGKVSIDPSWNIVGTKNVSSRMEIQKGEDFMRSLITKVTNETKKLFYMDVFKLSSTERRYGLAQCTRDLTNEQCRKCLEAMLAQVPKCCEQKVGWLAGSASCLLKYDDYMFYLFHNQSSSAPLPDQQTAKQGSTSKSRNWIIVLSVLGSATLLCFSVYCFWCRNRVRKDSLAPDTIPLSSYEETLNADLPTIPLITILQSTGNFSDTSKLGAGGFGPVYKGILPDGRQVAVKRLSKASGQGSEEFKNEVMFIAKLQHRNLVRLLACCLEENEKLLVYEYLSNSSLDFHLFDDDKRKQLDWKLRLSIINGIARGILYLHEDSPLKIIHRDLKASNVLLDHEMNPKISDFGLARAFHTGQNQANTNRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIISGKKNSGFYLSEHGQSLLLYTWKKWCEGKCLELMDLVLETSYIASEVVKCIHIGLLCVQEDAADRPTMSSVVVMLASDTMALPKPKAPAFSVGRMILLLSFNPFITKAQSPNYVGDDCHNTTQKVLSSTYKTNLNSTLSWLSSDAATSKGYNHTTIGNKASGDAVYGLYDCRGDVVGTFCQFCVSTATREVLQRCPNRASAVIWYDFCILRYSNENFFGNVTIDPSWHAFGTKNISSVIEIQKGEDFMRSLIRKATIETNQLFYMDGFNLSPTQRRYGLVQCSRDLTNEGCRQCLEAMLAQVPKCCEQRIGWQVLAASCLIKYDDYVFYLFNNQAPSVPVRNPQTDQDTPNADLPTIPLITILRSTDNFSEASKLGAGGYGPVYKGILPDGRQIAVKRLSKASGQGSEEFKNEVMLIAKLQHRNLVRLLACCLEENEKLLVYEYLSNASLDFHLFDDEKRKQLDWKLRLSIINGIARGILYLHEDSRLKIIHRDLKASNVLLDHEMNPKISDFGLARAFQTGQNQANTNRVMGTYGYMAPEYAMEGLFSVKSDVFSFGVLVLEIICGKKNSGFYLSEHGQSLLLYTWKKWCEGKCLELMDLVLETSHIASEVVKCIHIGLLCVQEDAADRPTMSSVVVMLASDTMALPRPKQPAFSVGRMTLEDASTSQSSKNLSINKVTISNILPR. 1225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g09729 1224 SUPERFAMILY Protein kinase-like (PK-like) 891 1210 IPR011009 -
Seca4g09729 1224 Gene3D Transferase(Phosphotransferase) domain 1 417 620 - -
Seca4g09729 1224 Gene3D Transferase(Phosphotransferase) domain 1 982 1185 - -
Seca4g09729 1224 FunFam Cysteine-rich receptor-like protein kinase 28 651 753 - -
Seca4g09729 1224 ProSiteProfiles Gnk2-homologous domain profile. 649 754 IPR002902 -
Seca4g09729 1224 Pfam Domain of unknown function (DUF3403) 1179 1224 IPR021820 GO:0004674
Seca4g09729 1224 ProSiteProfiles Gnk2-homologous domain profile. 760 865 IPR002902 -
Seca4g09729 1224 FunFam Liguleless narrow1 417 620 - -
Seca4g09729 1224 CDD STKc_IRAK 347 612 - -
Seca4g09729 1224 FunFam Cysteine-rich receptor-like protein kinase 28 34 136 - -
Seca4g09729 1224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 462 474 IPR008271 GO:0004672|GO:0006468
Seca4g09729 1224 ProSiteProfiles Gnk2-homologous domain profile. 32 137 IPR002902 -
Seca4g09729 1224 Gene3D Phosphorylase Kinase; domain 1 874 981 - -
Seca4g09729 1224 Gene3D Phosphorylase Kinase; domain 1 311 416 - -
Seca4g09729 1224 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 311 416 - -
Seca4g09729 1224 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1027 1039 IPR008271 GO:0004672|GO:0006468
Seca4g09729 1224 Pfam Salt stress response/antifungal 167 246 IPR002902 -
Seca4g09729 1224 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Seca4g09729 1224 Pfam Salt stress response/antifungal 655 751 IPR002902 -
Seca4g09729 1224 Pfam Salt stress response/antifungal 783 863 IPR002902 -
Seca4g09729 1224 ProSiteProfiles Gnk2-homologous domain profile. 143 248 IPR002902 -
Seca4g09729 1224 SUPERFAMILY Protein kinase-like (PK-like) 328 633 IPR011009 -
Seca4g09729 1224 Gene3D - 32 137 IPR038408 -
Seca4g09729 1224 Gene3D - 649 754 IPR038408 -
Seca4g09729 1224 Gene3D - 148 248 IPR038408 -
Seca4g09729 1224 Gene3D - 768 865 IPR038408 -
Seca4g09729 1224 SMART serkin_6 906 1182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09729 1224 SMART serkin_6 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09729 1224 FunFam cysteine-rich receptor-like protein kinase 10 982 1184 - -
Seca4g09729 1224 FunFam Cysteine-rich receptor-like protein kinase 10 146 248 - -
Seca4g09729 1224 ProSiteProfiles Protein kinase domain profile. 906 1192 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09729 1224 ProSiteProfiles Protein kinase domain profile. 341 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g09729 1224 Pfam Protein tyrosine and serine/threonine kinase 345 611 IPR001245 GO:0004672|GO:0006468
Seca4g09729 1224 Pfam Protein tyrosine and serine/threonine kinase 910 1176 IPR001245 GO:0004672|GO:0006468
Seca4g09729 1224 CDD STKc_IRAK 912 1177 - -
Seca4g09729 1224 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 20 628 - -
Seca4g09729 1224 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 872 981 - -
Seca4g09729 1224 FunFam Cysteine-rich receptor-like protein kinase 10 763 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g09729 Seca-Chr4 228488593 228505002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g09729 13 632 Receptor kinase-like Gene Family AT4G05200 43.328 4.89e-170 518
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca4g09729 PK_Tyr_Ser-Thr 1.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g09729 - - ahf:112718031 1502.26